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from unittest import TestCase
import gffutils
synthetic_path = gffutils.example_filename("synthetic.gff3")
num_synthetic_features = 18
num_synthetic_overlap = 13
class TestWithSynthDB(TestCase):
def setUp(self):
self.db = gffutils.create_db(
synthetic_path, ":memory:", merge_strategy="create_unique"
) # type: gffutils.FeatureDB
self.assertEqual(num_synthetic_features, self.db.count_features_of_type())
def _dump_db(self):
return "\n".join(map(str, self.db.all_features()))
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