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import gc
import sys
import unittest
import warnings
from contextlib import contextmanager
from functools import partial
from igraph import (
ALL,
Edge,
EdgeSeq,
Graph,
IN,
InternalError,
is_degree_sequence,
is_graphical,
is_graphical_degree_sequence,
Matrix,
Vertex,
VertexSeq,
)
from igraph._igraph import EdgeSeq as _EdgeSeq, VertexSeq as _VertexSeq
from .utils import is_pypy
try:
import numpy as np
except ImportError:
np = None
class BasicTests(unittest.TestCase):
def testGraphCreation(self):
g = Graph()
self.assertTrue(isinstance(g, Graph))
self.assertTrue(g.vcount() == 0 and g.ecount() == 0 and not g.is_directed())
g = Graph(3, [(0, 1), (1, 2), (2, 0)])
self.assertTrue(
g.vcount() == 3
and g.ecount() == 3
and not g.is_directed()
and g.is_simple()
)
g = Graph(2, [(0, 1), (1, 2), (2, 3)], True)
self.assertTrue(
g.vcount() == 4 and g.ecount() == 3 and g.is_directed() and g.is_simple()
)
g = Graph([(0, 1), (1, 2), (2, 1)])
self.assertTrue(
g.vcount() == 3
and g.ecount() == 3
and not g.is_directed()
and not g.is_simple()
)
g = Graph(((0, 1), (0, 0), (1, 2)))
self.assertTrue(
g.vcount() == 3
and g.ecount() == 3
and not g.is_directed()
and not g.is_simple()
)
g = Graph(8, None)
self.assertEqual(8, g.vcount())
self.assertEqual(0, g.ecount())
self.assertFalse(g.is_directed())
g = Graph(edges=None)
self.assertEqual(0, g.vcount())
self.assertEqual(0, g.ecount())
self.assertFalse(g.is_directed())
self.assertRaises(TypeError, Graph, edgelist=[(1, 2)])
@unittest.skipIf(np is None, "test case depends on NumPy")
def testGraphCreationWithNumPy(self):
# NumPy array with integers
arr = np.array([(0, 1), (1, 2), (2, 3)])
g = Graph(arr, directed=True)
self.assertTrue(
g.vcount() == 4 and g.ecount() == 3 and g.is_directed() and g.is_simple()
)
# Sliced NumPy array -- the sliced array is non-contiguous but we
# automatically make it so
arr = np.array([(0, 1), (10, 11), (1, 2), (11, 12), (2, 3), (12, 13)])
g = Graph(arr[::2, :], directed=True)
self.assertTrue(
g.vcount() == 4 and g.ecount() == 3 and g.is_directed() and g.is_simple()
)
# 1D NumPy array -- should raise a TypeError because we need a 2D array
arr = np.array([0, 1, 1, 2, 2, 3])
self.assertRaises(TypeError, Graph, arr)
# 3D NumPy array -- should raise a TypeError because we need a 2D array
arr = np.array([([0, 1], [10, 11]), ([1, 2], [11, 12]), ([2, 3], [12, 13])])
self.assertRaises(TypeError, Graph, arr)
# NumPy array with strings -- should be a casting error
arr = np.array([("a", "b"), ("c", "d"), ("e", "f")])
self.assertRaises(ValueError, Graph, arr)
def testAddVertex(self):
g = Graph()
vertex = g.add_vertex()
self.assertTrue(g.vcount() == 1 and g.ecount() == 0)
self.assertEqual(0, vertex.index)
self.assertFalse("name" in g.vertex_attributes())
vertex = g.add_vertex("foo")
self.assertTrue(g.vcount() == 2 and g.ecount() == 0)
self.assertEqual(1, vertex.index)
self.assertTrue("name" in g.vertex_attributes())
self.assertEqual(g.vs["name"], [None, "foo"])
vertex = g.add_vertex("3")
self.assertTrue(g.vcount() == 3 and g.ecount() == 0)
self.assertEqual(2, vertex.index)
self.assertTrue("name" in g.vertex_attributes())
self.assertEqual(g.vs["name"], [None, "foo", "3"])
vertex = g.add_vertex(name="bar")
self.assertTrue(g.vcount() == 4 and g.ecount() == 0)
self.assertEqual(3, vertex.index)
self.assertTrue("name" in g.vertex_attributes())
self.assertEqual(g.vs["name"], [None, "foo", "3", "bar"])
vertex = g.add_vertex(name="frob", spam="cheese", ham=42)
self.assertTrue(g.vcount() == 5 and g.ecount() == 0)
self.assertEqual(4, vertex.index)
self.assertEqual(sorted(g.vertex_attributes()), ["ham", "name", "spam"])
self.assertEqual(g.vs["spam"], [None] * 4 + ["cheese"])
self.assertEqual(g.vs["ham"], [None] * 4 + [42])
with self.assertWarns(DeprecationWarning, msg="integers as vertex names"):
g.add_vertex(42)
def testAddVertices(self):
g = Graph()
g.add_vertices(2)
self.assertTrue(g.vcount() == 2 and g.ecount() == 0)
g.add_vertices("spam")
self.assertTrue(g.vcount() == 3 and g.ecount() == 0)
self.assertEqual(g.vs[2]["name"], "spam")
g.add_vertices(["bacon", "eggs"])
self.assertTrue(g.vcount() == 5 and g.ecount() == 0)
self.assertEqual(g.vs[2:]["name"], ["spam", "bacon", "eggs"])
g.add_vertices(2, attributes={"color": ["k", "b"]})
self.assertEqual(g.vs[2:]["name"], ["spam", "bacon", "eggs", None, None])
self.assertEqual(g.vs[5:]["color"], ["k", "b"])
def testDeleteVertices(self):
g = Graph([(0, 1), (1, 2), (2, 3), (0, 2), (3, 4), (4, 5)])
self.assertEqual(6, g.vcount())
self.assertEqual(6, g.ecount())
# Delete a single vertex
g.delete_vertices(4)
self.assertEqual(5, g.vcount())
self.assertEqual(4, g.ecount())
# Delete multiple vertices
g.delete_vertices([1, 3])
self.assertEqual(3, g.vcount())
self.assertEqual(1, g.ecount())
# Delete a vertex sequence
g.delete_vertices(g.vs[:2])
self.assertEqual(1, g.vcount())
self.assertEqual(0, g.ecount())
# Delete a single vertex object
g.vs[0].delete()
self.assertEqual(0, g.vcount())
self.assertEqual(0, g.ecount())
# Delete vertices by name
g = Graph.Full(4)
g.vs["name"] = ["spam", "bacon", "eggs", "ham"]
self.assertEqual(4, g.vcount())
g.delete_vertices("spam")
self.assertEqual(3, g.vcount())
g.delete_vertices(["bacon", "ham"])
self.assertEqual(1, g.vcount())
# Deleting a nonexistent vertex
self.assertRaises(ValueError, g.delete_vertices, "no-such-vertex")
self.assertRaises(InternalError, g.delete_vertices, 2)
# Delete all vertices
g.delete_vertices()
self.assertEqual(0, g.vcount())
def testAddEdge(self):
g = Graph()
g.add_vertices(["spam", "bacon", "eggs", "ham"])
edge = g.add_edge(0, 1)
self.assertEqual(g.vcount(), 4)
self.assertEqual(g.get_edgelist(), [(0, 1)])
self.assertEqual(0, edge.index)
self.assertEqual((0, 1), edge.tuple)
edge = g.add_edge(1, 2, foo="bar")
self.assertEqual(g.vcount(), 4)
self.assertEqual(g.get_edgelist(), [(0, 1), (1, 2)])
self.assertEqual(1, edge.index)
self.assertEqual((1, 2), edge.tuple)
self.assertEqual("bar", edge["foo"])
self.assertEqual([None, "bar"], g.es["foo"])
def testAddEdges(self):
g = Graph()
g.add_vertices(["spam", "bacon", "eggs", "ham"])
g.add_edges([(0, 1)])
self.assertEqual(g.vcount(), 4)
self.assertEqual(g.get_edgelist(), [(0, 1)])
g.add_edges([(1, 2), (2, 3), (1, 3)])
self.assertEqual(g.vcount(), 4)
self.assertEqual(g.get_edgelist(), [(0, 1), (1, 2), (2, 3), (1, 3)])
g.add_edges([("spam", "eggs"), ("spam", "ham")])
self.assertEqual(g.vcount(), 4)
self.assertEqual(
g.get_edgelist(), [(0, 1), (1, 2), (2, 3), (1, 3), (0, 2), (0, 3)]
)
g.add_edges([(0, 0), (1, 1)], attributes={"color": ["k", "b"]})
self.assertEqual(
g.get_edgelist(),
[
(0, 1),
(1, 2),
(2, 3),
(1, 3),
(0, 2),
(0, 3),
(0, 0),
(1, 1),
],
)
self.assertEqual(g.es["color"], [None, None, None, None, None, None, "k", "b"])
def testDeleteEdges(self):
g = Graph.Famous("petersen")
g.vs["name"] = list("ABCDEFGHIJ")
el = g.get_edgelist()
self.assertEqual(15, g.ecount())
# Deleting single edge
g.delete_edges(14)
el[14:] = []
self.assertEqual(14, g.ecount())
self.assertEqual(el, g.get_edgelist())
# Deleting multiple edges
g.delete_edges([2, 5, 7])
el[7:8] = []
el[5:6] = []
el[2:3] = []
self.assertEqual(11, g.ecount())
self.assertEqual(el, g.get_edgelist())
# Deleting edge object
g.es[6].delete()
el[6:7] = []
self.assertEqual(10, g.ecount())
self.assertEqual(el, g.get_edgelist())
# Deleting edge sequence object
g.es[1:4].delete()
el[1:4] = []
self.assertEqual(7, g.ecount())
self.assertEqual(el, g.get_edgelist())
# Deleting edges by IDs
g.delete_edges([(2, 7), (5, 8)])
el[4:5] = []
el[1:2] = []
self.assertEqual(5, g.ecount())
self.assertEqual(el, g.get_edgelist())
# Deleting edges by names
g.delete_edges([("D", "I"), ("G", "I")])
el[3:4] = []
el[1:2] = []
self.assertEqual(3, g.ecount())
self.assertEqual(el, g.get_edgelist())
# Deleting nonexistent edges
self.assertRaises(ValueError, g.delete_edges, [(0, 2)])
self.assertRaises(ValueError, g.delete_edges, [("A", "C")])
self.assertRaises(ValueError, g.delete_edges, [(0, 15)])
# Delete all edges
g.delete_edges()
self.assertEqual(0, g.ecount())
def testClear(self):
g = Graph.Famous("petersen")
g["name"] = list("petersen")
# Clearing the graph
g.clear()
self.assertEqual(0, g.vcount())
self.assertEqual(0, g.ecount())
self.assertEqual([], g.attributes())
def testGraphGetEid(self):
g = Graph.Famous("petersen")
g.vs["name"] = list("ABCDEFGHIJ")
edges_to_ids = {v: k for k, v in enumerate(g.get_edgelist())}
for (source, target), edge_id in edges_to_ids.items():
source_name, target_name = g.vs[(source, target)]["name"]
self.assertEqual(edge_id, g.get_eid(source, target))
self.assertEqual(edge_id, g.get_eid(source_name, target_name))
self.assertRaises(InternalError, g.get_eid, 0, 11)
self.assertRaises(ValueError, g.get_eid, "A", "K")
def testGraphGetEids(self):
g = Graph.Famous("petersen")
eids = g.get_eids(pairs=[(0, 1), (0, 5), (1, 6), (4, 9), (8, 6)])
self.assertTrue(eids == [0, 2, 4, 9, 12])
eids = g.get_eids(pairs=[(7, 9), (9, 6)])
self.assertTrue(eids == [14, 13])
self.assertRaises(InternalError, g.get_eids, pairs=[(0, 1), (0, 2)])
self.assertRaises(TypeError, g.get_eids, pairs=None)
def testAdjacency(self):
g = Graph(4, [(0, 1), (1, 2), (2, 0), (2, 3)], directed=True)
self.assertTrue(g.neighbors(2) == [0, 1, 3])
self.assertTrue(g.predecessors(2) == [1])
self.assertTrue(g.successors(2) == [0, 3])
self.assertTrue(g.get_adjlist() == [[1], [2], [0, 3], []])
self.assertTrue(g.get_adjlist(IN) == [[2], [0], [1], [2]])
self.assertTrue(g.get_adjlist(ALL) == [[1, 2], [0, 2], [0, 1, 3], [2]])
def testEdgeIncidence(self):
g = Graph(4, [(0, 1), (1, 2), (2, 0), (2, 3)], directed=True)
self.assertTrue(g.incident(2) == [2, 3])
self.assertTrue(g.incident(2, IN) == [1])
self.assertTrue(g.incident(2, ALL) == [2, 1, 3])
self.assertTrue(g.get_inclist() == [[0], [1], [2, 3], []])
self.assertTrue(g.get_inclist(IN) == [[2], [0], [1], [3]])
self.assertTrue(g.get_inclist(ALL) == [[0, 2], [0, 1], [2, 1, 3], [3]])
def testMultiplesLoops(self):
g = Graph.Tree(7, 2)
# has_multiple
self.assertFalse(g.has_multiple())
g.add_vertices(1)
g.add_edges([(0, 1), (7, 7), (6, 6), (6, 6), (6, 6)])
# is_loop
self.assertTrue(
g.is_loop()
== [False, False, False, False, False, False, False, True, True, True, True]
)
self.assertTrue(g.is_loop(g.ecount() - 2))
self.assertTrue(g.is_loop(list(range(6, 8))) == [False, True])
# is_multiple
self.assertTrue(
g.is_multiple()
== [
False,
False,
False,
False,
False,
False,
True,
False,
False,
True,
True,
]
)
# has_multiple
self.assertTrue(g.has_multiple())
# count_multiple
self.assertTrue(g.count_multiple() == [2, 1, 1, 1, 1, 1, 2, 1, 3, 3, 3])
self.assertTrue(g.count_multiple(g.ecount() - 1) == 3)
self.assertTrue(g.count_multiple(list(range(2, 5))) == [1, 1, 1])
# check if a mutual directed edge pair is reported as multiple
g = Graph(2, [(0, 1), (1, 0)], directed=True)
self.assertTrue(g.is_multiple() == [False, False])
def testPickling(self):
import pickle
g = Graph([(0, 1), (1, 2)])
g["data"] = "abcdef"
g.vs["data"] = [3, 4, 5]
g.es["data"] = ["A", "B"]
g.custom_data = None
pickled = pickle.dumps(g)
g2 = pickle.loads(pickled)
self.assertTrue(g["data"] == g2["data"])
self.assertTrue(g.vs["data"] == g2.vs["data"])
self.assertTrue(g.es["data"] == g2.es["data"])
self.assertTrue(g.vcount() == g2.vcount())
self.assertTrue(g.ecount() == g2.ecount())
self.assertTrue(g.is_directed() == g2.is_directed())
self.assertTrue(g2.custom_data == g.custom_data)
def testHashing(self):
g = Graph([(0, 1), (1, 2)])
self.assertRaises(TypeError, hash, g)
def testIteration(self):
g = Graph()
self.assertRaises(TypeError, iter, g)
class DatatypeTests(unittest.TestCase):
def testMatrix(self):
m = Matrix([[1, 2, 3], [4, 5], [6, 7, 8]])
self.assertTrue(m.shape == (3, 3))
# Reading data
self.assertTrue(m.data == [[1, 2, 3], [4, 5, 0], [6, 7, 8]])
self.assertTrue(m[1, 1] == 5)
self.assertTrue(m[0] == [1, 2, 3])
self.assertTrue(m[0, :] == [1, 2, 3])
self.assertTrue(m[:, 0] == [1, 4, 6])
self.assertTrue(m[2, 0:2] == [6, 7])
self.assertTrue(m[:, :].data == [[1, 2, 3], [4, 5, 0], [6, 7, 8]])
self.assertTrue(m[:, 1:3].data == [[2, 3], [5, 0], [7, 8]])
# Writing data
m[1, 1] = 10
self.assertTrue(m[1, 1] == 10)
m[1] = (6, 5, 4)
self.assertTrue(m[1] == [6, 5, 4])
m[1:3] = [[4, 5, 6], (7, 8, 9)]
self.assertTrue(m[1:3].data == [[4, 5, 6], [7, 8, 9]])
# Minimums and maximums
self.assertTrue(m.min() == 1)
self.assertTrue(m.max() == 9)
self.assertTrue(m.min(0) == [1, 2, 3])
self.assertTrue(m.max(0) == [7, 8, 9])
self.assertTrue(m.min(1) == [1, 4, 7])
self.assertTrue(m.max(1) == [3, 6, 9])
# Special constructors
m = Matrix.Fill(2, (3, 3))
self.assertTrue(m.min() == 2 and m.max() == 2 and m.shape == (3, 3))
m = Matrix.Zero(5, 4)
self.assertTrue(m.min() == 0 and m.max() == 0 and m.shape == (5, 4))
m = Matrix.Identity(3)
self.assertTrue(m.data == [[1, 0, 0], [0, 1, 0], [0, 0, 1]])
m = Matrix.Identity(3, 2)
self.assertTrue(m.data == [[1, 0], [0, 1], [0, 0]])
# Conversion to string
m = Matrix.Identity(3)
self.assertTrue(str(m) == "[[1, 0, 0]\n [0, 1, 0]\n [0, 0, 1]]")
self.assertTrue(repr(m) == "Matrix([[1, 0, 0], [0, 1, 0], [0, 0, 1]])")
class GraphDictListTests(unittest.TestCase):
def setUp(self):
self.vertices = [
{"name": "Alice", "age": 48, "gender": "F"},
{"name": "Bob", "age": 33, "gender": "M"},
{"name": "Cecil", "age": 45, "gender": "F"},
{"name": "David", "age": 34, "gender": "M"},
]
self.edges = [
{"source": "Alice", "target": "Bob", "friendship": 4, "advice": 4},
{"source": "Cecil", "target": "Bob", "friendship": 5, "advice": 5},
{"source": "Cecil", "target": "Alice", "friendship": 5, "advice": 5},
{"source": "David", "target": "Alice", "friendship": 2, "advice": 4},
{"source": "David", "target": "Bob", "friendship": 1, "advice": 2},
]
def testGraphFromDictList(self):
g = Graph.DictList(self.vertices, self.edges)
self.checkIfOK(g, "name")
g = Graph.DictList(self.vertices, self.edges, iterative=True)
self.checkIfOK(g, "name")
def testGraphFromDictIterator(self):
g = Graph.DictList(iter(self.vertices), iter(self.edges))
self.checkIfOK(g, "name")
g = Graph.DictList(iter(self.vertices), iter(self.edges), iterative=True)
self.checkIfOK(g, "name")
def testGraphFromDictIteratorNoVertices(self):
g = Graph.DictList(None, iter(self.edges))
self.checkIfOK(g, "name", check_vertex_attrs=False)
g = Graph.DictList(None, iter(self.edges), iterative=True)
self.checkIfOK(g, "name", check_vertex_attrs=False)
def testGraphFromDictListExtraVertexName(self):
del self.vertices[2:] # No data for "Cecil" and "David"
g = Graph.DictList(self.vertices, self.edges)
self.assertTrue(g.vcount() == 4 and g.ecount() == 5 and not g.is_directed())
self.assertTrue(g.vs["name"] == ["Alice", "Bob", "Cecil", "David"])
self.assertTrue(g.vs["age"] == [48, 33, None, None])
self.assertTrue(g.vs["gender"] == ["F", "M", None, None])
self.assertTrue(g.es["friendship"] == [4, 5, 5, 2, 1])
self.assertTrue(g.es["advice"] == [4, 5, 5, 4, 2])
self.assertTrue(g.get_edgelist() == [(0, 1), (1, 2), (0, 2), (0, 3), (1, 3)])
def testGraphFromDictListAlternativeName(self):
for vdata in self.vertices:
vdata["name_alternative"] = vdata["name"]
del vdata["name"]
g = Graph.DictList(
self.vertices, self.edges, vertex_name_attr="name_alternative"
)
self.checkIfOK(g, "name_alternative")
g = Graph.DictList(
self.vertices,
self.edges,
vertex_name_attr="name_alternative",
iterative=True,
)
self.checkIfOK(g, "name_alternative")
def checkIfOK(self, g, name_attr, check_vertex_attrs=True):
self.assertTrue(g.vcount() == 4 and g.ecount() == 5 and not g.is_directed())
self.assertTrue(g.get_edgelist() == [(0, 1), (1, 2), (0, 2), (0, 3), (1, 3)])
self.assertTrue(g.vs[name_attr] == ["Alice", "Bob", "Cecil", "David"])
if check_vertex_attrs:
self.assertTrue(g.vs["age"] == [48, 33, 45, 34])
self.assertTrue(g.vs["gender"] == ["F", "M", "F", "M"])
self.assertTrue(g.es["friendship"] == [4, 5, 5, 2, 1])
self.assertTrue(g.es["advice"] == [4, 5, 5, 4, 2])
class GraphTupleListTests(unittest.TestCase):
def setUp(self):
self.edges = [
("Alice", "Bob", 4, 4),
("Cecil", "Bob", 5, 5),
("Cecil", "Alice", 5, 5),
("David", "Alice", 2, 4),
("David", "Bob", 1, 2),
]
def testGraphFromTupleList(self):
g = Graph.TupleList(self.edges)
self.checkIfOK(g, "name", ())
def testGraphFromTupleListWithEdgeAttributes(self):
g = Graph.TupleList(self.edges, edge_attrs=("friendship", "advice"))
self.checkIfOK(g, "name", ("friendship", "advice"))
g = Graph.TupleList(self.edges, edge_attrs=("friendship",))
self.checkIfOK(g, "name", ("friendship",))
g = Graph.TupleList(self.edges, edge_attrs="friendship")
self.checkIfOK(g, "name", ("friendship",))
def testGraphFromTupleListWithDifferentNameAttribute(self):
g = Graph.TupleList(self.edges, vertex_name_attr="spam")
self.checkIfOK(g, "spam", ())
def testGraphFromTupleListWithWeights(self):
g = Graph.TupleList(self.edges, weights=True)
self.checkIfOK(g, "name", ("weight",))
g = Graph.TupleList(self.edges, weights="friendship")
self.checkIfOK(g, "name", ("friendship",))
g = Graph.TupleList(self.edges, weights=False)
self.checkIfOK(g, "name", ())
self.assertRaises(
ValueError,
Graph.TupleList,
[self.edges],
weights=True,
edge_attrs="friendship",
)
def testNoneForMissingAttributes(self):
g = Graph.TupleList(self.edges, edge_attrs=("friendship", "advice", "spam"))
self.checkIfOK(g, "name", ("friendship", "advice", "spam"))
def checkIfOK(self, g, name_attr, edge_attrs):
self.assertTrue(g.vcount() == 4 and g.ecount() == 5 and not g.is_directed())
self.assertTrue(g.get_edgelist() == [(0, 1), (1, 2), (0, 2), (0, 3), (1, 3)])
self.assertTrue(g.attributes() == [])
self.assertTrue(g.vertex_attributes() == [name_attr])
self.assertTrue(g.vs[name_attr] == ["Alice", "Bob", "Cecil", "David"])
if edge_attrs:
self.assertTrue(sorted(g.edge_attributes()) == sorted(edge_attrs))
self.assertTrue(g.es[edge_attrs[0]] == [4, 5, 5, 2, 1])
if len(edge_attrs) > 1:
self.assertTrue(g.es[edge_attrs[1]] == [4, 5, 5, 4, 2])
if len(edge_attrs) > 2:
self.assertTrue(g.es[edge_attrs[2]] == [None] * 5)
else:
self.assertTrue(g.edge_attributes() == [])
class GraphListDictTests(unittest.TestCase):
def setUp(self):
self.eids = {
0: [1],
2: [1, 0],
3: [0, 1],
}
self.edges = {
"Alice": ["Bob"],
"Cecil": ["Bob", "Alice"],
"David": ["Alice", "Bob"],
}
def testEmptyGraphListDict(self):
g = Graph.ListDict({})
self.assertEqual(g.vcount(), 0)
def testGraphFromListDict(self):
g = Graph.ListDict(self.eids)
self.checkIfOK(g, ())
def testGraphFromListDictWithNames(self):
g = Graph.ListDict(self.edges)
self.checkIfOK(g, "name")
def checkIfOK(self, g, name_attr):
self.assertTrue(g.vcount() == 4 and g.ecount() == 5 and not g.is_directed())
self.assertTrue(g.get_edgelist() == [(0, 1), (1, 2), (0, 2), (0, 3), (1, 3)])
self.assertTrue(g.attributes() == [])
if name_attr:
self.assertTrue(g.vertex_attributes() == [name_attr])
self.assertTrue(g.vs[name_attr] == ["Alice", "Bob", "Cecil", "David"])
self.assertTrue(g.edge_attributes() == [])
class GraphDictDictTests(unittest.TestCase):
def setUp(self):
self.eids = {
0: {1: {}},
2: {1: {}, 0: {}},
3: {0: {}, 1: {}},
}
self.edges = {
"Alice": {"Bob": {}},
"Cecil": {"Bob": {}, "Alice": {}},
"David": {"Alice": {}, "Bob": {}},
}
self.eids_with_props = {
0: {1: {"weight": 5.6, "additional": "abc"}},
2: {1: {"weight": 3.4}, 0: {"weight": 2}},
3: {0: {"weight": 1}, 1: {"weight": 5.6}},
}
def testEmptyGraphDictDict(self):
g = Graph.DictDict({})
self.assertEqual(g.vcount(), 0)
def testGraphFromDictDict(self):
g = Graph.DictDict(self.eids)
self.checkIfOK(g, ())
def testGraphFromDictDictWithProps(self):
g = Graph.DictDict(self.eids_with_props)
self.checkIfOK(g, (), edge_attrs=["additional", "weight"])
def testGraphFromDictDictWithNames(self):
g = Graph.DictDict(self.edges)
self.checkIfOK(g, "name")
def checkIfOK(self, g, name_attr, edge_attrs=None):
self.assertTrue(g.vcount() == 4 and g.ecount() == 5 and not g.is_directed())
self.assertTrue(g.get_edgelist() == [(0, 1), (1, 2), (0, 2), (0, 3), (1, 3)])
self.assertTrue(g.attributes() == [])
if name_attr:
self.assertTrue(g.vertex_attributes() == [name_attr])
self.assertTrue(g.vs[name_attr] == ["Alice", "Bob", "Cecil", "David"])
if edge_attrs is None:
self.assertEqual(g.edge_attributes(), [])
else:
self.assertEqual(sorted(g.edge_attributes()), sorted(edge_attrs))
class DegreeSequenceTests(unittest.TestCase):
def testIsDegreeSequence(self):
# Catch and suppress warnings because is_degree_sequence() is now
# deprecated
with warnings.catch_warnings():
warnings.simplefilter("ignore")
self.assertTrue(is_degree_sequence([]))
self.assertTrue(is_degree_sequence([], []))
self.assertTrue(is_degree_sequence([0]))
self.assertTrue(is_degree_sequence([0], [0]))
self.assertFalse(is_degree_sequence([1]))
self.assertTrue(is_degree_sequence([1], [1]))
self.assertTrue(is_degree_sequence([2]))
self.assertFalse(is_degree_sequence([2, 1, 1, 1]))
self.assertTrue(is_degree_sequence([2, 1, 1, 1], [1, 1, 1, 2]))
self.assertFalse(is_degree_sequence([2, 1, -2]))
self.assertFalse(is_degree_sequence([2, 1, 1, 1], [1, 1, 1, -2]))
self.assertTrue(is_degree_sequence([3, 3, 3, 3, 3, 3, 3, 3, 3, 3]))
self.assertTrue(is_degree_sequence([3, 3, 3, 3, 3, 3, 3, 3, 3, 3], None))
self.assertFalse(is_degree_sequence([3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3]))
self.assertTrue(
is_degree_sequence(
[3, 3, 3, 3, 3, 3, 3, 3, 3, 3], [4, 3, 2, 3, 4, 4, 2, 2, 4, 2]
)
)
def testIsGraphicalSequence(self):
# Catch and suppress warnings because is_graphical_degree_sequence() is now
# deprecated
with warnings.catch_warnings():
warnings.simplefilter("ignore")
self.assertTrue(is_graphical_degree_sequence([]))
self.assertTrue(is_graphical_degree_sequence([], []))
self.assertTrue(is_graphical_degree_sequence([0]))
self.assertTrue(is_graphical_degree_sequence([0], [0]))
self.assertFalse(is_graphical_degree_sequence([1]))
self.assertFalse(is_graphical_degree_sequence([1], [1]))
self.assertFalse(is_graphical_degree_sequence([2]))
self.assertFalse(is_graphical_degree_sequence([2, 1, 1, 1]))
self.assertTrue(is_graphical_degree_sequence([2, 1, 1, 1], [1, 1, 1, 2]))
self.assertFalse(is_graphical_degree_sequence([2, 1, -2]))
self.assertFalse(is_graphical_degree_sequence([2, 1, 1, 1], [1, 1, 1, -2]))
self.assertTrue(
is_graphical_degree_sequence([3, 3, 3, 3, 3, 3, 3, 3, 3, 3])
)
self.assertTrue(
is_graphical_degree_sequence([3, 3, 3, 3, 3, 3, 3, 3, 3, 3], None)
)
self.assertFalse(
is_graphical_degree_sequence([3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3])
)
self.assertTrue(
is_graphical_degree_sequence(
[3, 3, 3, 3, 3, 3, 3, 3, 3, 3], [4, 3, 2, 3, 4, 4, 2, 2, 4, 2]
)
)
self.assertTrue(is_graphical_degree_sequence([3, 3, 3, 3, 4]))
def testIsGraphicalNonSimple(self):
# Same as testIsDegreeSequence, but using is_graphical()
is_degree_sequence = partial(is_graphical, loops=True, multiple=True)
self.assertTrue(is_degree_sequence([]))
self.assertTrue(is_degree_sequence([], []))
self.assertTrue(is_degree_sequence([0]))
self.assertTrue(is_degree_sequence([0], [0]))
self.assertFalse(is_degree_sequence([1]))
self.assertTrue(is_degree_sequence([1], [1]))
self.assertTrue(is_degree_sequence([2]))
self.assertFalse(is_degree_sequence([2, 1, 1, 1]))
self.assertTrue(is_degree_sequence([2, 1, 1, 1], [1, 1, 1, 2]))
self.assertFalse(is_degree_sequence([2, 1, -2]))
self.assertFalse(is_degree_sequence([2, 1, 1, 1], [1, 1, 1, -2]))
self.assertTrue(is_degree_sequence([3, 3, 3, 3, 3, 3, 3, 3, 3, 3]))
self.assertTrue(is_degree_sequence([3, 3, 3, 3, 3, 3, 3, 3, 3, 3], None))
self.assertFalse(is_degree_sequence([3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3]))
self.assertTrue(
is_degree_sequence(
[3, 3, 3, 3, 3, 3, 3, 3, 3, 3], [4, 3, 2, 3, 4, 4, 2, 2, 4, 2]
)
)
def testIsGraphicalSimple(self):
# Same as testIsGraphicalDegreeSequence, but using is_graphical()
is_graphical_degree_sequence = partial(
is_graphical, loops=False, multiple=False
)
self.assertTrue(is_graphical_degree_sequence([]))
self.assertTrue(is_graphical_degree_sequence([], []))
self.assertTrue(is_graphical_degree_sequence([0]))
self.assertTrue(is_graphical_degree_sequence([0], [0]))
self.assertFalse(is_graphical_degree_sequence([1]))
self.assertFalse(is_graphical_degree_sequence([1], [1]))
self.assertFalse(is_graphical_degree_sequence([2]))
self.assertFalse(is_graphical_degree_sequence([2, 1, 1, 1]))
self.assertTrue(is_graphical_degree_sequence([2, 1, 1, 1], [1, 1, 1, 2]))
self.assertFalse(is_graphical_degree_sequence([2, 1, -2]))
self.assertFalse(is_graphical_degree_sequence([2, 1, 1, 1], [1, 1, 1, -2]))
self.assertTrue(is_graphical_degree_sequence([3, 3, 3, 3, 3, 3, 3, 3, 3, 3]))
self.assertTrue(
is_graphical_degree_sequence([3, 3, 3, 3, 3, 3, 3, 3, 3, 3], None)
)
self.assertFalse(
is_graphical_degree_sequence([3, 3, 3, 3, 3, 3, 3, 3, 3, 3, 3])
)
self.assertTrue(
is_graphical_degree_sequence(
[3, 3, 3, 3, 3, 3, 3, 3, 3, 3], [4, 3, 2, 3, 4, 4, 2, 2, 4, 2]
)
)
self.assertTrue(is_graphical_degree_sequence([3, 3, 3, 3, 4]))
class InheritedGraph(Graph):
def __init__(self, *args, **kwds):
super().__init__(*args, **kwds)
self.init_called = True
def __new__(cls, *args, **kwds):
result = Graph.__new__(cls)
result.new_called = True
return result
@classmethod
def Adjacency(cls, *args, **kwds):
result = super().Adjacency(*args, **kwds)
result.adjacency_called = True
return result
class InheritedGraphWithEarlyMethodCallInInit(Graph):
def __init__(self, *args, **kwds):
self.call_result = self.degree()
super().__init__(*args, **kwds)
self.init_called = True
class InheritedGraphWithEarlyMethodCallInNew(Graph):
def __new__(cls, *args, **kwds):
instance = super().__new__(cls, *args, **kwds)
instance.call_result = instance.degree()
return instance
class InheritedGraphThatReturnsNonGraphFromNew(Graph):
def __new__(cls, *args, **kwds):
super().__new__(cls, *args, **kwds)
return 42
class InheritanceTests(unittest.TestCase):
def testInitCalledProperly(self):
g = InheritedGraph()
self.assertTrue(isinstance(g, InheritedGraph))
self.assertTrue(getattr(g, "init_called", False))
def testNewCalledProperly(self):
g = InheritedGraph()
self.assertTrue(isinstance(g, InheritedGraph))
self.assertTrue(getattr(g, "new_called", False))
def testInitCalledProperlyWithClassMethod(self):
g = InheritedGraph.Tree(3, 2)
self.assertTrue(isinstance(g, InheritedGraph))
self.assertTrue(getattr(g, "init_called", False))
def testNewCalledProperlyWithClassMethod(self):
g = InheritedGraph.Tree(3, 2)
self.assertTrue(isinstance(g, InheritedGraph))
self.assertTrue(getattr(g, "new_called", False))
def testCallingClassMethodInSuperclass(self):
g = InheritedGraph.Adjacency([[0, 1, 1], [1, 0, 0], [1, 0, 0]])
self.assertTrue(isinstance(g, InheritedGraph))
self.assertTrue(getattr(g, "adjacency_called", True))
def testCallingInstanceMethodTooEarly(self):
# Creating an InheritedGraphWithEarlyMethodCallInInit instance should
# not crash the runtime
g = InheritedGraphWithEarlyMethodCallInInit([(0, 1), (1, 2), (2, 3)])
self.assertEqual(4, g.vcount())
self.assertEqual([1, 2, 2, 1], g.degree())
self.assertEqual([], g.call_result)
# Creating an InheritedGraphWithEarlyMethodCallInNew instance should
# not crash the runtime either
g = InheritedGraphWithEarlyMethodCallInNew([(0, 1), (1, 2), (2, 3)])
self.assertEqual(4, g.vcount())
self.assertEqual([1, 2, 2, 1], g.degree())
self.assertEqual([], g.call_result)
def testInheritedGraphThatReturnsSomethingElseFromNew(self):
g = InheritedGraphThatReturnsNonGraphFromNew([(0, 1)], directed=True)
self.assertEqual(42, g)
@contextmanager
def assert_reference_not_leaked(case, *args):
gc.collect()
refs_before = [sys.getrefcount(obj) for obj in args]
try:
yield
finally:
gc.collect()
refs_after = [sys.getrefcount(obj) for obj in args]
case.assertListEqual(refs_before, refs_after)
@unittest.skipIf(is_pypy, "reference counts are not relevant for PyPy")
class ReferenceCountTests(unittest.TestCase):
def testEdgeReferenceCounting(self):
with assert_reference_not_leaked(self, Edge, EdgeSeq, _EdgeSeq):
g = Graph.Tree(3, 2)
edge = g.es[1]
del edge, g
def testEdgeSeqReferenceCounting(self):
with assert_reference_not_leaked(self, Edge, EdgeSeq, _EdgeSeq):
g = Graph.Tree(3, 2)
es = g.es
es2 = EdgeSeq(g)
del es, es2, g
def testGraphReferenceCounting(self):
with assert_reference_not_leaked(self, Graph, InheritedGraph):
g = Graph.Tree(3, 2)
self.assertTrue(gc.is_tracked(g))
del g
def testInheritedGraphReferenceCounting(self):
with assert_reference_not_leaked(self, Graph, InheritedGraph):
g = InheritedGraph.Tree(3, 2)
self.assertTrue(gc.is_tracked(g))
del g
def testVertexReferenceCounting(self):
with assert_reference_not_leaked(self, Vertex, VertexSeq, _VertexSeq):
g = Graph.Tree(3, 2)
vertex = g.vs[2]
del vertex, g
def testVertexSeqReferenceCounting(self):
with assert_reference_not_leaked(self, Vertex, VertexSeq, _VertexSeq):
g = Graph.Tree(3, 2)
vs = g.vs
vs2 = VertexSeq(g)
del vs2, vs, g
def suite():
basic_suite = unittest.defaultTestLoader.loadTestsFromTestCase(BasicTests)
datatype_suite = unittest.defaultTestLoader.loadTestsFromTestCase(DatatypeTests)
graph_dict_list_suite = unittest.defaultTestLoader.loadTestsFromTestCase(
GraphDictListTests
)
graph_tuple_list_suite = unittest.defaultTestLoader.loadTestsFromTestCase(
GraphTupleListTests
)
graph_list_dict_suite = unittest.defaultTestLoader.loadTestsFromTestCase(
GraphListDictTests
)
graph_dict_dict_suite = unittest.defaultTestLoader.loadTestsFromTestCase(
GraphDictDictTests
)
degree_sequence_suite = unittest.defaultTestLoader.loadTestsFromTestCase(
DegreeSequenceTests
)
inheritance_suite = unittest.defaultTestLoader.loadTestsFromTestCase(
InheritanceTests
)
refcount_suite = unittest.defaultTestLoader.loadTestsFromTestCase(
ReferenceCountTests
)
return unittest.TestSuite(
[
basic_suite,
datatype_suite,
graph_dict_list_suite,
graph_tuple_list_suite,
graph_list_dict_suite,
graph_dict_dict_suite,
degree_sequence_suite,
inheritance_suite,
refcount_suite,
]
)
def test():
runner = unittest.TextTestRunner()
runner.run(suite())
if __name__ == "__main__":
test()
|