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import gzip
import io
import unittest
import warnings
from igraph import Graph, InternalError
from .utils import temporary_file
try:
import networkx as nx
except ImportError:
nx = None
try:
import graph_tool as gt
except ImportError:
gt = None
try:
import pandas as pd
except ImportError:
pd = None
GRAPHML_EXAMPLE_FILE = """\
<?xml version="1.0" encoding="UTF-8"?>
<graphml xmlns="http://graphml.graphdrawing.org/xmlns"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="http://graphml.graphdrawing.org/xmlns
http://graphml.graphdrawing.org/xmlns/1.0/graphml.xsd">
<!-- Created by igraph -->
<key id="v_name" for="node" attr.name="name" attr.type="string"/>
<graph id="G" edgedefault="undirected">
<node id="n0">
<data key="v_name">a</data>
</node>
<node id="n1">
<data key="v_name">b</data>
</node>
<node id="n2">
<data key="v_name">c</data>
</node>
<node id="n3">
<data key="v_name">d</data>
</node>
<node id="n4">
<data key="v_name">e</data>
</node>
<node id="n5">
<data key="v_name">f</data>
</node>
<edge source="n0" target="n1">
</edge>
<edge source="n0" target="n2">
</edge>
<edge source="n0" target="n3">
</edge>
<edge source="n1" target="n2">
</edge>
<edge source="n3" target="n4">
</edge>
<edge source="n3" target="n5">
</edge>
<edge source="n4" target="n5">
</edge>
</graph>
</graphml>
"""
class ForeignTests(unittest.TestCase):
def testDIMACS(self):
with temporary_file(
"""\
c
c This is a simple example file to demonstrate the
c DIMACS input file format for minimum-cost flow problems.
c
c problem line :
p max 4 5
c
c node descriptor lines :
n 1 s
n 4 t
c
c arc descriptor lines :
a 1 2 4
a 1 3 2
a 2 3 2
a 2 4 3
a 3 4 5
"""
) as tmpfname:
graph = Graph.Read_DIMACS(tmpfname, False)
self.assertTrue(isinstance(graph, Graph))
self.assertTrue(graph.vcount() == 4 and graph.ecount() == 5)
self.assertTrue(graph["source"] == 0 and graph["target"] == 3)
self.assertTrue(graph.es["capacity"] == [4, 2, 2, 3, 5])
graph.write_dimacs(tmpfname)
def testDL(self):
with temporary_file(
"""\
dl n=5
format = fullmatrix
labels embedded
data:
larry david lin pat russ
Larry 0 1 1 1 0
david 1 0 0 0 1
Lin 1 0 0 1 0
Pat 1 0 1 0 1
russ 0 1 0 1 0
"""
) as tmpfname:
g = Graph.Read_DL(tmpfname)
self.assertTrue(isinstance(g, Graph))
self.assertTrue(g.vcount() == 5 and g.ecount() == 12)
self.assertTrue(g.is_directed())
self.assertTrue(
sorted(g.get_edgelist())
== [
(0, 1),
(0, 2),
(0, 3),
(1, 0),
(1, 4),
(2, 0),
(2, 3),
(3, 0),
(3, 2),
(3, 4),
(4, 1),
(4, 3),
]
)
with temporary_file(
"""\
dl n=5
format = fullmatrix
labels:
barry,david
lin,pat
russ
data:
0 1 1 1 0
1 0 0 0 1
1 0 0 1 0
1 0 1 0 1
0 1 0 1 0
"""
) as tmpfname:
g = Graph.Read_DL(tmpfname)
self.assertTrue(isinstance(g, Graph))
self.assertTrue(g.vcount() == 5 and g.ecount() == 12)
self.assertTrue(g.is_directed())
self.assertTrue(
sorted(g.get_edgelist())
== [
(0, 1),
(0, 2),
(0, 3),
(1, 0),
(1, 4),
(2, 0),
(2, 3),
(3, 0),
(3, 2),
(3, 4),
(4, 1),
(4, 3),
]
)
with temporary_file(
"""\
DL n=5
format = edgelist1
labels:
george, sally, jim, billy, jane
labels embedded:
data:
george sally 2
george jim 3
sally jim 4
billy george 5
jane jim 6
"""
) as tmpfname:
g = Graph.Read_DL(tmpfname, False)
self.assertTrue(isinstance(g, Graph))
self.assertTrue(g.vcount() == 5 and g.ecount() == 5)
self.assertTrue(not g.is_directed())
self.assertTrue(
sorted(g.get_edgelist()) == [(0, 1), (0, 2), (0, 3), (1, 2), (2, 4)]
)
def _testNCOLOrLGL(self, func, fname, can_be_reopened=True):
g = func(fname, names=False, weights=False, directed=False)
self.assertTrue(isinstance(g, Graph))
self.assertTrue(g.vcount() == 4 and g.ecount() == 5)
self.assertTrue(not g.is_directed())
self.assertTrue(
sorted(g.get_edgelist()) == [(0, 1), (0, 2), (1, 1), (1, 3), (2, 3)]
)
self.assertTrue(
"name" not in g.vertex_attributes() and "weight" not in g.edge_attributes()
)
if not can_be_reopened:
return
g = func(fname, names=False, directed=False)
self.assertTrue(
"name" not in g.vertex_attributes() and "weight" in g.edge_attributes()
)
self.assertTrue(g.es["weight"] == [1, 2, 0, 3, 0])
g = func(fname, directed=False)
self.assertTrue(
"name" in g.vertex_attributes() and "weight" in g.edge_attributes()
)
self.assertTrue(g.vs["name"] == ["eggs", "spam", "ham", "bacon"])
self.assertTrue(g.es["weight"] == [1, 2, 0, 3, 0])
def testNCOL(self):
with temporary_file(
"""\
eggs spam 1
ham eggs 2
ham bacon
bacon spam 3
spam spam"""
) as tmpfname:
self._testNCOLOrLGL(func=Graph.Read_Ncol, fname=tmpfname)
with temporary_file(
"""\
eggs spam
ham eggs
ham bacon
bacon spam
spam spam"""
) as tmpfname:
g = Graph.Read_Ncol(tmpfname)
self.assertTrue(
"name" in g.vertex_attributes() and "weight" not in g.edge_attributes()
)
@unittest.skipIf(pd is None, "test case depends on Pandas")
def testNCOLWithDataFrame(self):
# Regression test for https://github.com/igraph/python-igraph/issues/446
from pandas import DataFrame
df = DataFrame({"from": [1, 2], "to": [2, 3]})
self.assertRaises(TypeError, Graph.Read_Ncol, df)
def testLGL(self):
with temporary_file(
"""\
# eggs
spam 1
# ham
eggs 2
bacon
# bacon
spam 3
# spam
spam"""
) as tmpfname:
self._testNCOLOrLGL(func=Graph.Read_Lgl, fname=tmpfname)
with temporary_file(
"""\
# eggs
spam
# ham
eggs
bacon
# bacon
spam
# spam
spam"""
) as tmpfname:
with warnings.catch_warnings():
warnings.simplefilter("ignore")
g = Graph.Read_Lgl(tmpfname)
self.assertTrue(
"name" in g.vertex_attributes() and "weight" not in g.edge_attributes()
)
# This is not an LGL file; we are testing error handling here
with temporary_file(
"""\
1 2
1 3
"""
) as tmpfname:
with self.assertRaises(InternalError):
Graph.Read_Lgl(tmpfname)
def testLGLWithIOModule(self):
with temporary_file(
"""\
# eggs
spam 1
# ham
eggs 2
bacon
# bacon
spam 3
# spam
spam"""
) as tmpfname:
with io.open(tmpfname, "r") as fp:
self._testNCOLOrLGL(
func=Graph.Read_Lgl, fname=fp, can_be_reopened=False
)
def testAdjacency(self):
with temporary_file(
"""\
# Test comment line
0 1 1 0 0 0
1 0 1 0 0 0
1 1 0 0 0 0
0 0 0 0 2 2
0 0 0 2 0 2
0 0 0 2 2 0
"""
) as tmpfname:
g = Graph.Read_Adjacency(tmpfname)
self.assertTrue(isinstance(g, Graph))
self.assertEqual(g.vcount(), 6)
self.assertEqual(g.ecount(), 18)
self.assertTrue(g.is_directed())
self.assertTrue("weight" not in g.edge_attributes())
g = Graph.Read_Adjacency(tmpfname, attribute="weight")
self.assertTrue(isinstance(g, Graph))
self.assertEqual(g.vcount(), 6)
self.assertEqual(g.ecount(), 12)
self.assertTrue(g.is_directed())
self.assertTrue(g.es["weight"] == [1, 1, 1, 1, 1, 1, 2, 2, 2, 2, 2, 2])
g.write_adjacency(tmpfname)
def testGraphML(self):
with temporary_file(GRAPHML_EXAMPLE_FILE) as tmpfname:
try:
g = Graph.Read_GraphML(tmpfname)
except NotImplementedError as e:
self.skipTest(str(e))
self.assertTrue(isinstance(g, Graph))
self.assertEqual(g.vcount(), 6)
self.assertEqual(g.ecount(), 7)
self.assertFalse(g.is_directed())
self.assertTrue("name" in g.vertex_attributes())
g.write_graphml(tmpfname)
g.write_graphml(tmpfname, prefixattr=False)
def testGraphMLz(self):
with temporary_file(
gzip.compress(GRAPHML_EXAMPLE_FILE.encode("utf-8"))
) as tmpfname:
try:
g = Graph.Read_GraphMLz(tmpfname)
except NotImplementedError as e:
self.skipTest(str(e))
self.assertTrue(isinstance(g, Graph))
self.assertEqual(g.vcount(), 6)
self.assertEqual(g.ecount(), 7)
self.assertFalse(g.is_directed())
self.assertTrue("name" in g.vertex_attributes())
def testPickle(self):
pickle = [
128,
2,
99,
105,
103,
114,
97,
112,
104,
10,
71,
114,
97,
112,
104,
10,
113,
1,
40,
75,
3,
93,
113,
2,
75,
1,
75,
2,
134,
113,
3,
97,
137,
125,
125,
125,
116,
82,
113,
4,
125,
98,
46,
]
pickle = bytes(pickle)
with temporary_file(pickle, "wb", binary=True) as tmpfname:
g = Graph.Read_Pickle(pickle)
self.assertTrue(isinstance(g, Graph))
self.assertTrue(g.vcount() == 3 and g.ecount() == 1 and not g.is_directed())
g.write_pickle(tmpfname)
def testDictList(self):
g = Graph.Full(3)
# Check with vertex ids
self.assertEqual(
g.to_dict_list(),
(
[{}, {}, {}],
[
{"source": 0, "target": 1},
{"source": 0, "target": 2},
{"source": 1, "target": 2},
],
),
)
# Check failure for vertex names
self.assertRaises(AttributeError, g.to_dict_list, False)
# Check with vertex names
g.vs["name"] = ["apple", "pear", "peach"]
self.assertEqual(
g.to_dict_list(),
(
[{"name": "apple"}, {"name": "pear"}, {"name": "peach"}],
[
{"source": 0, "target": 1},
{"source": 0, "target": 2},
{"source": 1, "target": 2},
],
),
)
self.assertEqual(
g.to_dict_list(use_vids=False),
(
[{"name": "apple"}, {"name": "pear"}, {"name": "peach"}],
[
{"source": "apple", "target": "pear"},
{"source": "apple", "target": "peach"},
{"source": "pear", "target": "peach"},
],
),
)
def testTupleList(self):
g = Graph.Full(3)
# Check with vertex ids
self.assertEqual(
g.to_tuple_list(),
[(0, 1), (0, 2), (1, 2)],
)
# Check failure for edge names
self.assertRaises(AttributeError, g.to_tuple_list, True, "name")
# Edge attributes
g.es["name"] = ["first_edge", "second", None]
self.assertEqual(
g.to_tuple_list(edge_attrs="name"),
[(0, 1, "first_edge"), (0, 2, "second"), (1, 2, None)],
)
self.assertEqual(
g.to_tuple_list(edge_attrs=["name"]),
[(0, 1, "first_edge"), (0, 2, "second"), (1, 2, None)],
)
# Missing vertex names
self.assertRaises(AttributeError, g.to_tuple_list, False)
# Vertex names
g.vs["name"] = ["apple", "pear", "peach"]
self.assertEqual(
g.to_tuple_list(use_vids=False, edge_attrs="name"),
[
("apple", "pear", "first_edge"),
("apple", "peach", "second"),
("pear", "peach", None),
],
)
def testSequenceDict(self):
g = Graph.Full(3)
# Check with vertex ids
self.assertEqual(g.to_list_dict(), {0: [1, 2], 1: [2]})
self.assertEqual(
g.to_list_dict(sequence_constructor=tuple),
{0: (1, 2), 1: (2,)},
)
# Check failure for vertex names
self.assertRaises(AttributeError, g.to_list_dict, False)
# Check with vertex names
g.vs["name"] = ["apple", "pear", "peach"]
self.assertEqual(
g.to_list_dict(use_vids=False),
{"apple": ["pear", "peach"], "pear": ["peach"]},
)
def testDictDict(self):
g = Graph([(0, 1), (0, 2), (1, 2)])
# Check with vertex ids, no edge attrs
self.assertEqual(
g.to_dict_dict(),
{0: {1: {}, 2: {}}, 1: {2: {}}},
)
# With vertex ids, edge attrs
g.es["name"] = ["first_edge", "second", None]
# Check with vertex ids, incomplete edge attrs
self.assertEqual(
g.to_dict_dict(),
{
0: {1: {"name": "first_edge"}, 2: {"name": "second"}},
1: {2: {"name": None}},
},
)
self.assertEqual(
g.to_dict_dict(skip_none=True),
{0: {1: {"name": "first_edge"}, 2: {"name": "second"}}, 1: {2: {}}},
)
# With vertex names
g.vs["name"] = ["apple", "pear", "peach"]
self.assertEqual(
g.to_dict_dict(use_vids=False),
{
"apple": {"pear": {"name": "first_edge"}, "peach": {"name": "second"}},
"pear": {"peach": {"name": None}},
},
)
self.assertEqual(
g.to_dict_dict(use_vids=False, skip_none=True),
{
"apple": {"pear": {"name": "first_edge"}, "peach": {"name": "second"}},
"pear": {"peach": {}},
},
)
@unittest.skipIf(pd is None, "test case depends on Pandas")
def testVertexDataFrames(self):
g = Graph([(0, 1), (0, 2), (0, 3), (1, 2), (2, 4)])
# No vertex names, no attributes
df = g.get_vertex_dataframe()
self.assertEqual(df.shape, (5, 0))
self.assertEqual(list(df.index), [0, 1, 2, 3, 4])
# Vertex names, no attributes
g.vs["name"] = ["eggs", "spam", "ham", "bacon", "yello"]
df = g.get_vertex_dataframe()
self.assertEqual(df.shape, (5, 1))
self.assertEqual(list(df.index), [0, 1, 2, 3, 4])
self.assertEqual(list(df["name"]), g.vs["name"])
self.assertEqual(list(df.columns), ["name"])
# Vertex names and attributes (common case)
g.vs["weight"] = [0, 5, 1, 4, 42]
df = g.get_vertex_dataframe()
self.assertEqual(df.shape, (5, 2))
self.assertEqual(list(df.index), [0, 1, 2, 3, 4])
self.assertEqual(list(df["name"]), g.vs["name"])
self.assertEqual(set(df.columns), {"name", "weight"})
self.assertEqual(list(df["weight"]), g.vs["weight"])
# No vertex names, with attributes (common case)
g = Graph([(0, 1), (0, 2), (0, 3), (1, 2), (2, 4)])
g.vs["weight"] = [0, 5, 1, 4, 42]
df = g.get_vertex_dataframe()
self.assertEqual(df.shape, (5, 1))
self.assertEqual(list(df.index), [0, 1, 2, 3, 4])
self.assertEqual(list(df.columns), ["weight"])
self.assertEqual(list(df["weight"]), g.vs["weight"])
@unittest.skipIf(pd is None, "test case depends on Pandas")
def testEdgeDataFrames(self):
g = Graph([(0, 1), (0, 2), (0, 3), (1, 2), (2, 4)])
# No edge names, no attributes
df = g.get_edge_dataframe()
self.assertEqual(df.shape, (5, 2))
self.assertEqual(list(df.index), [0, 1, 2, 3, 4])
self.assertEqual(list(df.columns), ["source", "target"])
# Edge names, no attributes
g.es["name"] = ["my", "list", "of", "five", "edges"]
df = g.get_edge_dataframe()
self.assertEqual(df.shape, (5, 3))
self.assertEqual(list(df.index), [0, 1, 2, 3, 4])
self.assertEqual(list(df["name"]), g.es["name"])
self.assertEqual(set(df.columns), {"source", "target", "name"})
# No edge names, with attributes
g = Graph([(0, 1), (0, 2), (0, 3), (1, 2), (2, 4)])
g.es["weight"] = [6, -0.4, 0, 1, 3]
df = g.get_edge_dataframe()
self.assertEqual(df.shape, (5, 3))
self.assertEqual(list(df.index), [0, 1, 2, 3, 4])
self.assertEqual(set(df.columns), {"source", "target", "weight"})
self.assertEqual(list(df["weight"]), g.es["weight"])
# Edge names, with weird attributes
g.es["name"] = ["my", "list", "of", "five", "edges"]
g.es["weight"] = [6, -0.4, 0, 1, 3]
g.es["source"] = ["this", "is", "a", "little", "tricky"]
df = g.get_edge_dataframe()
self.assertEqual(df.shape, (5, 5))
self.assertEqual(list(df.index), [0, 1, 2, 3, 4])
self.assertEqual(set(df.columns), {"source", "target", "name", "weight"})
self.assertEqual(list(df["name"]), g.es["name"])
self.assertEqual(list(df["weight"]), g.es["weight"])
i = 2 + list(df.columns[2:]).index("source")
self.assertEqual(list(df.iloc[:, i]), g.es["source"])
@unittest.skipIf(nx is None, "test case depends on networkx")
def testGraphNetworkx(self):
# Undirected
g = Graph.Ring(10)
g["gattr"] = "graph_attribute"
g.vs["vattr"] = list(range(g.vcount()))
g.es["eattr"] = list(range(len(g.es)))
# Go to networkx and back
g_nx = g.to_networkx()
g2 = Graph.from_networkx(g_nx)
self.assertFalse(g2.is_directed())
self.assertTrue(g2.is_simple())
self.assertEqual(g.vcount(), g2.vcount())
self.assertEqual(sorted(g.get_edgelist()), sorted(g2.get_edgelist()))
# Test attributes
self.assertEqual(g.attributes(), g2.attributes())
self.assertEqual(sorted(["vattr", "_nx_name"]), sorted(g2.vertex_attributes()))
for i, vertex in enumerate(g.vs):
vertex2 = g2.vs[i]
for an in vertex.attribute_names():
if an == "vattr":
continue
self.assertEqual(vertex.attributes()[an], vertex2.attributes()[an])
self.assertEqual(g.edge_attributes(), g2.edge_attributes())
for edge in g.es:
eid = g2.get_eid(edge.source, edge.target)
edge2 = g2.es[eid]
for an in edge.attribute_names():
self.assertEqual(edge.attributes()[an], edge2.attributes()[an])
# Directed
g = Graph.Ring(10, directed=True)
# Go to networkx and back
g_nx = g.to_networkx()
g2 = Graph.from_networkx(g_nx)
self.assertTrue(g2.is_directed())
self.assertTrue(g2.is_simple())
self.assertEqual(g.vcount(), g2.vcount())
self.assertEqual(sorted(g.get_edgelist()), sorted(g2.get_edgelist()))
# Test networkx with custom node hashables
# In this case each node is a tuple of ints
g_nx = nx.DiGraph()
inf = float("inf")
g_nx.add_edges_from(
(
((0, 0), (1, 1), {"weight": 3.0}),
((0, 0), (1, 0), {"weight": inf}),
)
)
g = Graph.from_networkx(g_nx)
self.assertTrue(g.is_directed())
self.assertEqual(g.vcount(), 3)
self.assertTrue(g.es["weight"] == [3.0, inf] or g.es["weight"] == [inf, 3.0])
@unittest.skipIf(nx is None, "test case depends on networkx")
def testMultigraphNetworkx(self):
# Undirected
g = Graph.Ring(10)
g.add_edge(0, 1)
g["gattr"] = "graph_attribute"
g.vs["vattr"] = list(range(g.vcount()))
g.es["eattr"] = list(range(len(g.es)))
# Go to networkx and back
g_nx = g.to_networkx()
g2 = Graph.from_networkx(g_nx)
self.assertFalse(g2.is_directed())
self.assertFalse(g2.is_simple())
self.assertEqual(g.vcount(), g2.vcount())
self.assertEqual(sorted(g.get_edgelist()), sorted(g2.get_edgelist()))
# Test attributes
self.assertEqual(g.attributes(), g2.attributes())
self.assertEqual(
sorted(["vattr", "_nx_name"]),
sorted(g2.vertex_attributes()),
)
self.assertEqual(
sorted(["eattr", "_nx_multiedge_key"]),
sorted(g2.edge_attributes()),
)
# Testing parallel edges is a bit more tricky
edge2_found = set()
for edge in g.es:
# Go through all parallel edges between these two vertices
for edge2 in g2.es:
if edge2 in edge2_found:
continue
if edge.source != edge2.source:
continue
if edge.target != edge2.target:
continue
# Check all attributes between these two
for an in edge.attribute_names():
if edge.attributes()[an] != edge2.attributes()[an]:
break
else:
# Correspondence found
edge2_found.add(edge2)
break
else:
self.assertTrue(False)
# Directed
g = Graph.Ring(10, directed=True)
g.add_edge(0, 1)
# Go to networkx and back
g_nx = g.to_networkx()
g2 = Graph.from_networkx(g_nx)
self.assertTrue(g2.is_directed())
self.assertFalse(g2.is_simple())
self.assertEqual(g.vcount(), g2.vcount())
self.assertEqual(sorted(g.get_edgelist()), sorted(g2.get_edgelist()))
@unittest.skipIf(gt is None, "test case depends on graph-tool")
def testGraphGraphTool(self):
# Undirected
g = Graph.Ring(10)
g["gattr"] = "graph_attribute"
g.vs["vattr"] = list(range(g.vcount()))
g.es["eattr"] = list(range(len(g.es)))
# Go to graph-tool and back
g_gt = g.to_graph_tool(
graph_attributes={"gattr": "object"},
vertex_attributes={"vattr": "int"},
edge_attributes={"eattr": "int"},
)
g2 = Graph.from_graph_tool(g_gt)
self.assertFalse(g2.is_directed())
self.assertTrue(g2.is_simple())
self.assertEqual(g.vcount(), g2.vcount())
self.assertEqual(sorted(g.get_edgelist()), sorted(g2.get_edgelist()))
# Test attributes
self.assertEqual(g.attributes(), g2.attributes())
self.assertEqual(g.vertex_attributes(), g2.vertex_attributes())
for i, vertex in enumerate(g.vs):
vertex2 = g2.vs[i]
for an in vertex.attribute_names():
self.assertEqual(vertex.attributes()[an], vertex2.attributes()[an])
self.assertEqual(g.edge_attributes(), g2.edge_attributes())
for edge in g.es:
eid = g2.get_eid(edge.source, edge.target)
edge2 = g2.es[eid]
for an in edge.attribute_names():
self.assertEqual(edge.attributes()[an], edge2.attributes()[an])
# Directed
g = Graph.Ring(10, directed=True)
# Go to graph-tool and back
g_gt = g.to_graph_tool()
g2 = Graph.from_graph_tool(g_gt)
self.assertTrue(g2.is_directed())
self.assertTrue(g2.is_simple())
self.assertEqual(g.vcount(), g2.vcount())
self.assertEqual(sorted(g.get_edgelist()), sorted(g2.get_edgelist()))
@unittest.skipIf(gt is None, "test case depends on graph-tool")
def testMultigraphGraphTool(self):
# Undirected
g = Graph.Ring(10)
g.add_edge(0, 1)
g["gattr"] = "graph_attribute"
g.vs["vattr"] = list(range(g.vcount()))
g.es["eattr"] = list(range(len(g.es)))
# Go to graph-tool and back
g_gt = g.to_graph_tool(
graph_attributes={"gattr": "object"},
vertex_attributes={"vattr": "int"},
edge_attributes={"eattr": "int"},
)
g2 = Graph.from_graph_tool(g_gt)
self.assertFalse(g2.is_directed())
self.assertFalse(g2.is_simple())
self.assertEqual(g.vcount(), g2.vcount())
self.assertEqual(sorted(g.get_edgelist()), sorted(g2.get_edgelist()))
# Test attributes
self.assertEqual(g.attributes(), g2.attributes())
self.assertEqual(g.vertex_attributes(), g2.vertex_attributes())
for i, vertex in enumerate(g.vs):
vertex2 = g2.vs[i]
for an in vertex.attribute_names():
self.assertEqual(vertex.attributes()[an], vertex2.attributes()[an])
self.assertEqual(g.edge_attributes(), g2.edge_attributes())
# Testing parallel edges is a bit more tricky
edge2_found = set()
for edge in g.es:
# Go through all parallel edges between these two vertices
for edge2 in g2.es:
if edge2 in edge2_found:
continue
if edge.source != edge2.source:
continue
if edge.target != edge2.target:
continue
# Check all attributes between these two
for an in edge.attribute_names():
if edge.attributes()[an] != edge2.attributes()[an]:
break
else:
# Correspondence found
edge2_found.add(edge2)
break
else:
self.assertTrue(False)
# Directed
g = Graph.Ring(10, directed=True)
g.add_edge(0, 1)
# Go to graph-tool and back
g_gt = g.to_graph_tool()
g2 = Graph.from_graph_tool(g_gt)
self.assertTrue(g2.is_directed())
self.assertFalse(g2.is_simple())
self.assertEqual(g.vcount(), g2.vcount())
self.assertEqual(sorted(g.get_edgelist()), sorted(g2.get_edgelist()))
def suite():
foreign_suite = unittest.defaultTestLoader.loadTestsFromTestCase(ForeignTests)
return unittest.TestSuite([foreign_suite])
def test():
runner = unittest.TextTestRunner()
runner.run(suite())
if __name__ == "__main__":
test()
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