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import unittest
from igraph import Graph, Layout, BoundingBox
class LayoutTests(unittest.TestCase):
def testConstructor(self):
layout = Layout([(0,0,1), (0,1,0), (1,0,0)])
self.assertEqual(layout.dim, 3)
layout = Layout([(0,0,1), (0,1,0), (1,0,0)], 3)
self.assertEqual(layout.dim, 3)
self.assertRaises(ValueError, Layout, [(0,1), (1,0)], 3)
def testIndexing(self):
layout = Layout([(0,0,1), (0,1,0), (1,0,0), (2,1,3)])
self.assertEqual(len(layout), 4)
self.assertEqual(layout[1], [0, 1, 0])
self.assertEqual(layout[3], [2, 1, 3])
row = layout[2]
row[2] = 1
self.assertEqual(layout[2], [1, 0, 1])
del layout[1]
self.assertEqual(len(layout), 3)
def testScaling(self):
layout = Layout([(0,0,1), (0,1,0), (1,0,0), (2,1,3)])
layout.scale(1.5)
self.assertEqual(layout.coords, [[0., 0., 1.5], \
[0., 1.5, 0.], \
[1.5, 0., 0.], \
[3., 1.5, 4.5]])
layout = Layout([(0,0,1), (0,1,0), (1,0,0), (2,1,3)])
layout.scale(1, 1, 3)
self.assertEqual(layout.coords, [[0, 0, 3], \
[0, 1, 0], \
[1, 0, 0], \
[2, 1, 9]])
layout = Layout([(0,0,1), (0,1,0), (1,0,0), (2,1,3)])
layout.scale((2, 2, 1))
self.assertEqual(layout.coords, [[0, 0, 1], \
[0, 2, 0], \
[2, 0, 0], \
[4, 2, 3]])
self.assertRaises(ValueError, layout.scale, 2, 3)
def testTranslation(self):
layout = Layout([(0,0,1), (0,1,0), (1,0,0), (2,1,3)])
layout2 = layout.copy()
layout.translate(1,3,2)
self.assertEqual(layout.coords, [[1, 3, 3], \
[1, 4, 2], \
[2, 3, 2], \
[3, 4, 5]])
layout.translate((-1,-3,-2))
self.assertEqual(layout.coords, layout2.coords)
self.assertRaises(ValueError, layout.translate, v=[3])
def testCentroid(self):
layout = Layout([(0,0,1), (0,1,0), (1,0,0), (2,1,3)])
centroid = layout.centroid()
self.assertEqual(len(centroid), 3)
self.assertAlmostEqual(centroid[0], 0.75)
self.assertAlmostEqual(centroid[1], 0.5)
self.assertAlmostEqual(centroid[2], 1.)
def testBoundaries(self):
layout = Layout([(0,0,1), (0,1,0), (1,0,0), (2,1,3)])
self.assertEqual(layout.boundaries(), ([0,0,0],[2,1,3]))
self.assertEqual(layout.boundaries(1), ([-1,-1,-1],[3,2,4]))
layout = Layout([])
self.assertRaises(ValueError, layout.boundaries)
layout = Layout([], dim=3)
self.assertRaises(ValueError, layout.boundaries)
def testBoundingBox(self):
layout = Layout([(0,1), (2,7)])
self.assertEqual(layout.bounding_box(), BoundingBox(0,1,2,7))
self.assertEqual(layout.bounding_box(1), BoundingBox(-1,0,3,8))
layout = Layout([])
self.assertEqual(layout.bounding_box(), BoundingBox(0,0,0,0))
def testCenter(self):
layout = Layout([(-2,0), (-2,-2), (0,-2), (0,0)])
layout.center()
self.assertEqual(layout.coords, [[-1,1], [-1,-1], [1,-1], [1,1]])
layout.center(5,5)
self.assertEqual(layout.coords, [[4,6], [4,4], [6,4], [6,6]])
self.assertRaises(ValueError, layout.center, 3)
self.assertRaises(TypeError, layout.center, p=6)
def testFitInto(self):
layout = Layout([(-2,0), (-2,-2), (0,-2), (0,0)])
layout.fit_into(BoundingBox(5,5,8,10), keep_aspect_ratio=False)
self.assertEqual(layout.coords, [[5, 10], [5, 5], [8, 5], [8, 10]])
layout = Layout([(-2,0), (-2,-2), (0,-2), (0,0)])
layout.fit_into(BoundingBox(5,5,8,10))
self.assertEqual(layout.coords, [[5, 9], [5, 6], [8, 6], [8, 9]])
layout = Layout([(-1,-1,-1), (0,0,0), (1,1,1), (2,2,0), (3,3,-1)])
layout.fit_into((0,0,0,8,8,4))
self.assertEqual(layout.coords, \
[[0, 0, 0], [2, 2, 2], [4, 4, 4], [6, 6, 2], [8, 8, 0]]
)
layout = Layout([])
layout.fit_into((6,7,8,11))
self.assertEqual(layout.coords, [])
def testToPolar(self):
layout = Layout([(0, 0), (-1, 1), (0, 1), (1, 1)])
layout.to_radial(min_angle=180, max_angle=0, max_radius=2)
exp = [[0., 0.], [-2., 0.], [0., 2.], [2, 0.]]
for idx in xrange(4):
self.assertAlmostEqual(layout.coords[idx][0], exp[idx][0], places=3)
self.assertAlmostEqual(layout.coords[idx][1], exp[idx][1], places=3)
def testTransform(self):
def tr(coord, dx, dy): return coord[0]+dx, coord[1]+dy
layout = Layout([(1, 2), (3, 4)])
layout.transform(tr, 2, -1)
self.assertEqual(layout.coords, [[3, 1], [5, 3]])
class LayoutAlgorithmTests(unittest.TestCase):
def testAuto(self):
def layout_test(graph, test_with_dims=(2, 3)):
lo = graph.layout("auto")
self.assertTrue(isinstance(lo, Layout))
self.assertEqual(len(lo[0]), 2)
for dim in test_with_dims:
lo = graph.layout("auto", dim=dim)
self.assertTrue(isinstance(lo, Layout))
self.assertEqual(len(lo[0]), dim)
return lo
g = Graph.Barabasi(10)
layout_test(g)
g = Graph.GRG(101, 0.2)
del g.vs["x"]
del g.vs["y"]
layout_test(g)
g = Graph.Full(10) * 2
layout_test(g)
g["layout"] = "graphopt"
layout_test(g, test_with_dims=())
g.vs["x"] = range(20)
g.vs["y"] = range(20, 40)
layout_test(g, test_with_dims=())
del g["layout"]
lo = layout_test(g, test_with_dims=(2,))
self.assertEqual([tuple(item) for item in lo],
zip(range(20), range(20, 40)))
g.vs["z"] = range(40, 60)
lo = layout_test(g)
self.assertEqual([tuple(item) for item in lo],
zip(range(20), range(20, 40), range(40, 60)))
def testCircle(self):
def test_is_proper_circular_layout(graph, layout):
xs, ys = zip(*layout)
n = graph.vcount()
self.assertEquals(n, len(xs))
self.assertEquals(n, len(ys))
self.assertAlmostEquals(0, sum(xs))
self.assertAlmostEquals(0, sum(ys))
for x, y in zip(xs, ys):
self.assertAlmostEquals(1, x**2+y**2)
g = Graph.Ring(8)
layout = g.layout("circle")
test_is_proper_circular_layout(g, g.layout("circle"))
def testFruchtermanReingold(self):
g = Graph.Barabasi(100)
lo = g.layout("fr")
self.assertTrue(isinstance(lo, Layout))
lo = g.layout("fr", miny=range(100))
self.assertTrue(isinstance(lo, Layout))
self.assertTrue(all(lo[i][1] >= i for i in xrange(100)))
lo = g.layout("fr", miny=range(100), maxy=range(100))
self.assertTrue(isinstance(lo, Layout))
self.assertTrue(all(lo[i][1] == i for i in xrange(100)))
lo = g.layout("fr", miny=[2]*100, maxy=[3]*100, minx=[4]*100, maxx=[6]*100)
self.assertTrue(isinstance(lo, Layout))
bbox = lo.bounding_box()
self.assertTrue(bbox.top >= 2)
self.assertTrue(bbox.bottom <= 3)
self.assertTrue(bbox.left >= 4)
self.assertTrue(bbox.right <= 6)
def testKamadaKawai(self):
g = Graph.Barabasi(100)
lo = g.layout("kk", miny=[2]*100, maxy=[3]*100, minx=[4]*100, maxx=[6]*100)
self.assertTrue(isinstance(lo, Layout))
bbox = lo.bounding_box()
self.assertTrue(bbox.top >= 2)
self.assertTrue(bbox.bottom <= 3)
self.assertTrue(bbox.left >= 4)
self.assertTrue(bbox.right <= 6)
def testMDS(self):
g = Graph.Tree(10, 2)
lo = g.layout("mds")
self.assertTrue(isinstance(lo, Layout))
dists = g.shortest_paths()
lo = g.layout("mds", dists)
self.assertTrue(isinstance(lo, Layout))
g += Graph.Tree(10, 2)
lo = g.layout("mds")
self.assertTrue(isinstance(lo, Layout))
def testReingoldTilford(self):
g = Graph.Barabasi(100)
lo = g.layout("rt")
ys = [coord[1] for coord in lo]
root = ys.index(0.0)
self.assertEqual(ys, g.shortest_paths(root)[0])
g = Graph.Barabasi(100) + Graph.Barabasi(50)
lo = g.layout("rt", root=[0, 100])
self.assertEqual(lo[100][1]-lo[0][1], 0)
lo = g.layout("rt", root=[0, 100], rootlevel=[2, 10])
self.assertEqual(lo[100][1]-lo[0][1], 8)
def testBipartite(self):
g = Graph.Full_Bipartite(3, 2)
lo = g.layout("bipartite")
ys = [coord[1] for coord in lo]
self.assertEqual([1, 1, 1, 0, 0], ys)
lo = g.layout("bipartite", vgap=3)
ys = [coord[1] for coord in lo]
self.assertEqual([3, 3, 3, 0, 0], ys)
lo = g.layout("bipartite", hgap=5)
self.assertEqual(set([0, 5, 10]), set(coord[0] for coord in lo if coord[1] == 1))
self.assertEqual(set([2.5, 7.5]), set(coord[0] for coord in lo if coord[1] == 0))
def testDRL(self):
# Regression test for bug #1091891
g = Graph.Ring(10, circular=False) + 1
lo = g.layout("drl")
self.assertTrue(isinstance(lo, Layout))
def suite():
layout_suite = unittest.makeSuite(LayoutTests)
layout_algorithm_suite = unittest.makeSuite(LayoutAlgorithmTests)
return unittest.TestSuite([layout_suite, layout_algorithm_suite])
def test():
runner = unittest.TextTestRunner()
runner.run(suite())
if __name__ == "__main__":
test()
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