1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
|
.. highlight:: rest
.. _citations_module:
The :mod:`ihm.citations` Python module
======================================
.. automodule:: ihm.citations
.. data:: imp
The Integrative Modeling Platform (IMP).
.. data:: pmi
The PMI module of the Integrative Modeling Platform (IMP).
.. data:: modeller
MODELLER, comparative modeling by satisfaction of spatial restraints.
.. data:: psipred
PSIPRED, protein secondary structure prediction based on position-specific
scoring matrices.
.. data:: disopred
DISOPRED, disordered region prediction.
.. data:: hhpred
HHpred, protein homology detection and structure prediction.
.. data:: relion
RELION, a Bayesian approach for cryo-EM structure determination.
.. data:: phyre2
Phyre2, a web portal for protein modeling, prediction and analysis.
.. data:: swiss_model
SWISS-MODEL: homology modeling of protein structures and complexes.
.. data:: alphafold2
AlphaFold: ab-initio modeling of protein structures.
.. data:: colabfold
ColabFold: accessible AlphaFold pipeline.
.. data:: qmeandisco
QMEANDisCo: model quality estimation with distance constraints.
.. data:: mmseqs2
MMseqs2: app for fast, interactive sequence searches.
|
