File: meta_test.py

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#! /usr/bin/env python
# -*- coding: utf-8 -*-

import os
import re
import sys
import time
import datetime
import unittest
import irods.exception as ex
from irods.manager.metadata_manager import InvalidAtomicAVURequest
from irods.meta import (
    iRODSMeta,
    AVUOperation,
    BadAVUOperationValue,
    BadAVUOperationKeyword,
)
from irods.models import DataObject, Collection, Resource, CollectionMeta
import irods.test.helpers as helpers
import irods.keywords as kw
from irods.session import iRODSSession
from irods.message import Bad_AVU_Field
from irods.models import ModelBase
from irods.column import Like, NotLike


def normalize_to_bytes(string, unicode_encoding="utf8"):
    # Python2 and 3 enumerate bytestrings differently.
    ord_ = (lambda _: _) if any(x for x in string[:1] if type(x) is int) else ord
    if not string or ord_(max(x for x in string)) > 255:
        return string.encode(unicode_encoding)
    # str->bytes type conversion using element-wise copy, aka a trivial encode.
    array = bytearray(ord_(x) for x in string)
    return bytes(array)


def resolves_to_identical_bytestrings(avu1, avu2, key=normalize_to_bytes):
    avu1 = tuple(avu1)
    avu2 = tuple(avu2)
    if len(avu1) != len(avu2):
        return False
    for field1, field2 in zip(avu1, avu2):
        if key(field1) != key(field2):
            return False
    return True


RODS_GENQUERY_INCLUDE_FILE_PATH = "/usr/include/irods/rodsGenQuery.h"


class TestMeta(unittest.TestCase):
    """Suite of tests on metadata operations"""

    # test metadata
    attr0, value0, unit0 = "attr0", "value0", "unit0"
    attr1, value1, unit1 = "attr1", "value1", "unit1"

    def test_stringtypes_in_general_query__issue_442(self):
        metadata = []
        value = "a\u1000b"
        value_encoded = value.encode("utf8")
        contains_value = {
            type(value_encoded): b"%%" + value_encoded + b"%%",
            type(value): "%%" + value + "%%",
        }
        for v in (value, value_encoded):

            # Establish invariant of exactly 2 AVUs attached to object.
            self.coll.metadata.remove_all()
            self.coll.metadata["a"] = iRODSMeta("a", value)
            self.coll.metadata["b"] = iRODSMeta("b", "<arbitrary>")
            q = self.sess.query(CollectionMeta).filter(
                Collection.name == self.coll_path
            )
            self.assertEqual(len(list(q)), 2)

            # Test query with operators Like and NotLike
            q = self.sess.query(CollectionMeta).filter(
                Collection.name == self.coll_path,
                NotLike(CollectionMeta.value, contains_value[type(v)]),
            )
            self.assertEqual(len(list(q)), 1)
            q = self.sess.query(CollectionMeta).filter(
                Collection.name == self.coll_path,
                Like(CollectionMeta.value, contains_value[type(v)]),
            )
            self.assertEqual(len(list(q)), 1)

            # Test query with operators == and !=
            q = self.sess.query(CollectionMeta).filter(
                Collection.name == self.coll_path, CollectionMeta.value == v
            )
            self.assertEqual(len(list(q)), 1)
            q = self.sess.query(CollectionMeta).filter(
                Collection.name == self.coll_path, CollectionMeta.value != v
            )
            self.assertEqual(len(list(q)), 1)
            metadata.append(self.coll.metadata["a"])

        # Test that application of unicode and bytestring metadata were equivalent
        self.assertEqual(metadata[0], metadata[1])

    def test_bytestring_AVUs_in_Python3__issue_442(self):
        data_object = self.sess.data_objects.get(self.obj_path)
        meta_set = iRODSMeta("\u1000".encode("utf8"), b"value", b"units")
        meta_add = iRODSMeta(*tuple(meta_set))
        meta_add.name += b"-add"
        data_object.metadata.set(meta_set)
        data_object.metadata.add(meta_add)
        for index, meta in [(m.name, m) for m in (meta_add, meta_set)]:
            fetched = data_object.metadata[index]
            self.assertTrue(
                resolves_to_identical_bytestrings(fetched, meta),
                "fetched unexpected meta for %r" % index,
            )

    def setUp(self):
        self.sess = helpers.make_session()
        # test data
        self.coll_path = "/{}/home/{}/test_dir".format(
            self.sess.zone, self.sess.username
        )
        self.obj_name = "test1"
        self.obj_path = "{coll_path}/{obj_name}".format(**vars(self))

        # Create test collection and (empty) test object
        self.coll = self.sess.collections.create(self.coll_path)
        self.obj = self.sess.data_objects.create(self.obj_path)

    def tearDown(self):
        """Remove test data and close connections"""
        self.coll.remove(recurse=True, force=True)
        helpers.remove_unused_metadata(self.sess)
        self.sess.cleanup()

    from irods.test.helpers import create_simple_resc, create_simple_resc_hierarchy

    def test_replica_truncate_json_error__issue_606(self):
        path = self.coll_path + "/atomic_meta_issue_606"
        obj = self.sess.data_objects.create(path)
        with self.create_simple_resc("repl_trunc_test_resc__issue_606") as f:
            try:
                obj.replica_truncate(1, **{kw.RESC_NAME_KW: f})
            except ex.iRODSException as e:
                resp = e.server_msg.get_json_encoded_struct()
                # Test that returned structure is a dict containing at least one item.
                self.assertIsInstance(resp, dict)
                self.assertTrue(resp)

    def test_atomic_metadata_json_error__issue_606(self):
        path = self.coll_path + "/atomic_meta_issue_606"
        obj = self.sess.data_objects.create(path)
        obj.unlink(force=True)
        fail_message = ""
        try:
            obj.metadata.apply_atomic_operations(
                AVUOperation(operation="add", avu=iRODSMeta("a", "b", "c"))
            )
        except ex.iRODSException as e:
            resp = e.server_msg.get_json_encoded_struct()
            self.assertIn(
                "Entity does not exist [entity_name={}]".format(obj.path),
                resp["error_message"],
            )
        except Exception as e:
            fail_message = "apply_atomic_operations on a nonexistent object raised an unexpected exception {e!r}".format(
                **locals()
            )
        else:
            fail_message = "apply_atomic_operations on a nonexistent object did not raise an exception as expected."

        if fail_message:
            self.fail(fail_message)

    def test_atomic_metadata_operations_244(self):
        user = self.sess.users.get("rods")
        group = self.sess.groups.get("public")
        m = ("attr_244", "value", "units")

        with self.assertRaises(BadAVUOperationValue):
            AVUOperation(operation="add", avu=m)

        with self.assertRaises(BadAVUOperationValue):
            AVUOperation(operation="not_add_or_remove", avu=iRODSMeta(*m))

        with self.assertRaises(BadAVUOperationKeyword):
            AVUOperation(operation="add", avu=iRODSMeta(*m), extra_keyword=None)

        with self.assertRaises(InvalidAtomicAVURequest):
            user.metadata.apply_atomic_operations(tuple())

        user.metadata.apply_atomic_operations()  # no AVUs applied - no-op without error

        for n, obj in enumerate((group, user, self.coll, self.obj)):
            avus = [
                iRODSMeta("some_attribute", str(i), "some_units")
                for i in range(n * 100, (n + 1) * 100)
            ]
            obj.metadata.apply_atomic_operations(
                *[AVUOperation(operation="add", avu=avu_) for avu_ in avus]
            )
            obj.metadata.apply_atomic_operations(
                *[AVUOperation(operation="remove", avu=avu_) for avu_ in avus]
            )

    def test_atomic_metadata_operation_for_resource_244(self):
        (root, leaf) = ("ptX", "rescX")
        with self.create_simple_resc_hierarchy(root, leaf):
            root_resc = self.sess.resources.get(root)  # resource objects
            leaf_resc = self.sess.resources.get(leaf)
            root_tuple = ("role", "root", "new units #1")  # AVU tuples to apply
            leaf_tuple = ("role", "leaf", "new units #2")
            root_resc.metadata.add(*root_tuple[:2])  # first apply without units ...
            leaf_resc.metadata.add(*leaf_tuple[:2])
            for resc, resc_tuple in ((root_resc, root_tuple), (leaf_resc, leaf_tuple)):
                resc.metadata.apply_atomic_operations(  # metadata set operation (remove + add) to add units
                    AVUOperation(operation="remove", avu=iRODSMeta(*resc_tuple[:2])),
                    AVUOperation(operation="add", avu=iRODSMeta(*resc_tuple[:3])),
                )
                resc_meta = self.sess.metadata.get(Resource, resc.name)
                avus_to_tuples = lambda avu_list: sorted(
                    [(i.name, i.value, i.units) for i in avu_list]
                )
                self.assertEqual(
                    avus_to_tuples(resc_meta), avus_to_tuples([iRODSMeta(*resc_tuple)])
                )

    def test_atomic_metadata_operation_for_data_object_244(self):
        AVUs_Equal = lambda avu1, avu2, fn=(lambda x: x): fn(avu1) == fn(avu2)
        AVU_As_Tuple = lambda avu, length=3: (avu.name, avu.value, avu.units)[:length]
        AVU_Units_String = lambda avu: "" if not avu.units else avu.units
        m = iRODSMeta("attr_244", "value", "units")
        self.obj.metadata.add(m)
        meta = self.sess.metadata.get(DataObject, self.obj_path)
        self.assertEqual(len(meta), 1)
        self.assertTrue(AVUs_Equal(m, meta[0], AVU_As_Tuple))
        self.obj.metadata.apply_atomic_operations(  # remove original AVU and replace
            AVUOperation(operation="remove", avu=m),  #   with two altered versions
            AVUOperation(
                operation="add", avu=iRODSMeta(m.name, m.value, "units_244")
            ),  # (one of them without units) ...
            AVUOperation(operation="add", avu=iRODSMeta(m.name, m.value)),
        )
        meta = self.sess.metadata.get(
            DataObject, self.obj_path
        )  # ... check integrity of change
        self.assertEqual(sorted([AVU_Units_String(i) for i in meta]), ["", "units_244"])

    def test_atomic_metadata_operations_255(self):
        my_resc = self.sess.resources.create("dummyResc", "passthru")
        avus = [iRODSMeta("a", "b", "c"), iRODSMeta("d", "e", "f")]
        objects = [
            self.sess.users.get("rods"),
            self.sess.groups.get("public"),
            my_resc,
            self.sess.collections.get(self.coll_path),
            self.sess.data_objects.get(self.obj_path),
        ]
        try:
            for obj in objects:
                self.assertEqual(len(obj.metadata.items()), 0)
                for n, item in enumerate(avus):
                    obj.metadata.apply_atomic_operations(
                        AVUOperation(operation="add", avu=item)
                    )
                    self.assertEqual(len(obj.metadata.items()), n + 1)
        finally:
            for obj in objects:
                obj.metadata.remove_all()
            my_resc.remove()

    def test_get_obj_meta(self):
        # get object metadata
        meta = self.sess.metadata.get(DataObject, self.obj_path)

        # there should be no metadata at this point
        assert len(meta) == 0

    def test_resc_meta(self):
        rescname = "demoResc"
        self.sess.resources.get(rescname).metadata.remove_all()
        self.sess.metadata.set(
            Resource, rescname, iRODSMeta("zero", "marginal", "cost")
        )
        self.sess.metadata.add(Resource, rescname, iRODSMeta("zero", "marginal"))
        self.sess.metadata.set(Resource, rescname, iRODSMeta("for", "ever", "after"))
        meta = self.sess.resources.get(rescname).metadata
        self.assertTrue(len(meta) == 3)
        resource = self.sess.resources.get(rescname)
        all_AVUs = resource.metadata.items()
        for avu in all_AVUs:
            resource.metadata.remove(avu)
        self.assertTrue(0 == len(self.sess.resources.get(rescname).metadata))

    def test_add_obj_meta(self):
        # add metadata to test object
        self.sess.metadata.add(
            DataObject, self.obj_path, iRODSMeta(self.attr0, self.value0)
        )
        self.sess.metadata.add(
            DataObject, self.obj_path, iRODSMeta(self.attr1, self.value1, self.unit1)
        )

        # Throw in some unicode for good measure
        attribute, value = "attr2", "☭⛷★⚽"
        self.sess.metadata.add(DataObject, self.obj_path, iRODSMeta(attribute, value))

        # get object metadata
        meta = self.sess.metadata.get(DataObject, self.obj_path)

        # sort results by metadata id
        def getKey(AVU):
            return AVU.avu_id

        meta = sorted(meta, key=getKey)

        # assertions
        assert meta[0].name == self.attr0
        assert meta[0].value == self.value0

        assert meta[1].name == self.attr1
        assert meta[1].value == self.value1
        assert meta[1].units == self.unit1

        assert meta[2].name == attribute
        assert meta[2].value == value

    def test_add_obj_meta_empty(self):
        """Should raise exception"""

        # try to add metadata with empty value
        with self.assertRaises(ValueError):
            self.sess.metadata.add(
                DataObject, self.obj_path, iRODSMeta("attr_with_empty_value", "")
            )

    def test_copy_obj_meta(self):
        # test destination object for copy
        dest_obj_path = self.coll_path + "/test2"
        self.sess.data_objects.create(dest_obj_path)

        # add metadata to test object
        self.sess.metadata.add(
            DataObject, self.obj_path, iRODSMeta(self.attr0, self.value0)
        )

        # copy metadata
        self.sess.metadata.copy(DataObject, DataObject, self.obj_path, dest_obj_path)

        # get destination object metadata
        dest_meta = self.sess.metadata.get(DataObject, dest_obj_path)

        # check metadata
        assert dest_meta[0].name == self.attr0

    def test_remove_obj_meta(self):
        # add metadata to test object
        self.sess.metadata.add(
            DataObject, self.obj_path, iRODSMeta(self.attr0, self.value0)
        )

        # check that metadata is there
        meta = self.sess.metadata.get(DataObject, self.obj_path)
        assert meta[0].name == self.attr0

        # remove metadata from object
        self.sess.metadata.remove(
            DataObject, self.obj_path, iRODSMeta(self.attr0, self.value0)
        )

        # check that metadata is gone
        meta = self.sess.metadata.get(DataObject, self.obj_path)
        assert len(meta) == 0

    def test_metadata_manipulations_with_admin_kw__364__365(self):
        try:
            d = user = None
            adm = self.sess

            if adm.server_version <= (4, 2, 11):
                self.skipTest(
                    "ADMIN_KW not valid for Metadata API in iRODS 4.2.11 and previous"
                )

            # Create a rodsuser, and a session for that roduser.
            user = adm.users.create("bobby", "rodsuser")
            user.modify("password", "bpass")
            with iRODSSession(
                port=adm.port,
                zone=adm.zone,
                host=adm.host,
                user=user.name,
                password="bpass",
            ) as ses:
                # Create a data object owned by the rodsuser.  Set AVUs in various ways and guarantee each attempt
                # has the desired effect.
                d = ses.data_objects.create(
                    "/{adm.zone}/home/{user.name}/testfile".format(**locals())
                )

                d.metadata.set("a", "aa", "1")
                self.assertIn(("a", "aa", "1"), d.metadata.items())

                d.metadata.set("a", "aa")
                self.assertEqual([("a", "aa")], [tuple(_) for _ in d.metadata.items()])

                d.metadata["a"] = iRODSMeta("a", "bb")
                self.assertEqual([("a", "bb")], [tuple(_) for _ in d.metadata.items()])

                # Now the admin does two AVU-set operations.  A successful test of these operations' success
                # includes that both ('x','y') has been added and ('a','b','c') has overwritten ('a','bb').

                da = adm.data_objects.get(d.path)
                da.metadata.set("a", "b", "c", **{kw.ADMIN_KW: ""})
                da.metadata(admin=True)["x"] = iRODSMeta("x", "y")
                d = ses.data_objects.get(d.path)  # assure metadata are not cached
                self.assertEqual(
                    set([("x", "y"), ("a", "b", "c")]),
                    set(tuple(_) for _ in d.metadata.items()),
                )
        finally:
            if d:
                d.unlink(force=True)
            if user:
                user.remove()

    def test_atomic_metadata_operations_with_admin_kw__issue_576(self):
        ses = data = user = None
        adm = self.sess

        if adm.server_version <= (4, 2, 11):
            self.skipTest(
                "ADMIN_KW not valid for Metadata API in iRODS 4.2.11 and previous"
            )

        try:
            # Create a rodsuser
            user = adm.users.create("bobby", "rodsuser")
            user.modify("password", "bpass")

            # Log in as rodsuser and create a data object owned by that user.
            ses = iRODSSession(
                port=adm.port,
                zone=adm.zone,
                host=adm.host,
                user=user.name,
                password="bpass",
            )
            home = helpers.home_collection(ses)
            data = ses.data_objects.create("{home}/issue_576".format(**locals()))

            # Do and test the results of the atomic set using the admin session, with the ADMIN_KW turned on.
            data_via_admin = adm.data_objects.get(data.path)
            avu_item = iRODSMeta("issue_576", "dummy_value")
            data_via_admin.metadata(admin=True).apply_atomic_operations(
                AVUOperation(operation="add", avu=avu_item)
            )
            self.assertIn(avu_item, data_via_admin.metadata.items())
        finally:
            # Clean up objects after use.
            if ses:
                if ses.data_objects.exists(data.path):
                    ses.data_objects.unlink(data.path, force=True)
                ses.cleanup()
            if user:
                user.remove()

    def test_add_coll_meta(self):
        # add metadata to test collection
        self.sess.metadata.add(
            Collection, self.coll_path, iRODSMeta(self.attr0, self.value0)
        )

        # get collection metadata
        meta = self.sess.metadata.get(Collection, self.coll_path)

        # assertions
        assert meta[0].name == self.attr0
        assert meta[0].value == self.value0

        # remove collection metadata
        self.sess.metadata.remove(
            Collection, self.coll_path, iRODSMeta(self.attr0, self.value0)
        )

        # check that metadata is gone
        meta = self.sess.metadata.get(Collection, self.coll_path)
        assert len(meta) == 0

    def test_meta_repr(self):
        # test obj
        collection = self.coll_path
        filename = "test_meta_repr.txt"
        test_obj_path = "{collection}/{filename}".format(**locals())

        # make object
        obj = helpers.make_object(self.sess, test_obj_path)

        # test AVU
        attribute, value, units = ("test_attr", "test_value", "test_units")

        # add metadata to test object
        meta = self.sess.metadata.add(
            DataObject, test_obj_path, iRODSMeta(attribute, value, units)
        )

        # get metadata
        meta = self.sess.metadata.get(DataObject, test_obj_path)
        avu_id = meta[0].avu_id

        # assert
        self.assertEqual(
            repr(meta[0]),
            "<iRODSMeta {avu_id} {attribute} {value} {units}>".format(**locals()),
        )

        # remove test object
        obj.unlink(force=True)

    def test_irodsmetacollection_data_obj(self):
        """
        Tested as data_object metadata
        """
        # test settings
        avu_count = 5

        # make test object
        test_obj_path = self.coll_path + "/test_irodsmetacollection"
        test_obj = helpers.make_object(self.sess, test_obj_path)

        # test AVUs
        triplets = [
            ("test_attr" + str(i), "test_value", "test_units") for i in range(avu_count)
        ]

        # get coll meta
        imc = test_obj.metadata

        # try invalid key
        with self.assertRaises(KeyError):
            imc.get_one("bad_key")

        # invalid key type
        with self.assertRaises(TypeError):
            imc.get_one(list())

        # try empty update values
        with self.assertRaises(ValueError):
            imc.add()

        # add AVUs
        for triplet in triplets:
            imc.add(*triplet)

        # add another AVU with existing attribute name
        attr_name = triplets[0][0]
        duplicate_triplet = (attr_name, "other_value", "test_units")
        imc.add(*duplicate_triplet)

        # get_one should fail
        with self.assertRaises(KeyError):
            imc.get_one(attr_name)

        # remove triplet
        imc.remove(*duplicate_triplet)
        imc.get_one(attr_name)

        # get keys
        for key in imc.keys():
            self.assertIn(key, [triplet[0] for triplet in triplets])

        # get items
        for avu in imc.items():
            self.assertIsInstance(avu, iRODSMeta)
            self.assertIn(avu.name, [triplet[0] for triplet in triplets])
            self.assertIn(avu.value, [triplet[1] for triplet in triplets])
            self.assertIn(avu.units, [triplet[2] for triplet in triplets])

        # try contains
        self.assertIn(triplets[0][0], imc)

        # try contains with bad key type
        with self.assertRaises(TypeError):
            _ = int() in imc

        # set item
        imc[attr_name] = iRODSMeta(attr_name, "boo")

        # get item
        _ = imc[attr_name]

        # del item with bad key type
        with self.assertRaises(TypeError):
            del imc[int()]

        # del item
        del imc[attr_name]

        with self.assertRaises(KeyError):
            _ = imc[attr_name]

        # remove all metadta
        imc.remove_all()
        self.assertEqual(len(imc), 0)

        # remove test collection
        test_obj.unlink(force=True)

    @staticmethod
    def check_timestamps(metadata_accessor, key):
        avu = metadata_accessor[key]
        create = getattr(avu, "create_time", None)
        modify = getattr(avu, "modify_time", None)
        return (create, modify)

    def test_timestamp_access_386(self):
        with helpers.make_session() as session:

            def units():
                return str(time.time())

            d = None
            try:
                d = session.data_objects.create("/tempZone/home/rods/issue_386")

                # Test metadata access without timestamps

                meta = d.metadata
                avu = iRODSMeta("no_ts", "val", units())
                meta.set(avu)
                self.assertEqual(
                    (None, None),  # Assert no timestamps are stored.
                    self.check_timestamps(meta, key=avu.name),
                )

                # -- Test metadata access with timestamps

                meta_ts = meta(timestamps=True)
                avu_use_ts = iRODSMeta("use_ts", "val", units())
                meta_ts.set(avu_use_ts)
                time.sleep(1.5)
                now = datetime.datetime.now(datetime.timezone.utc)
                time.sleep(1.5)
                avu_use_ts.units = units()
                meta_ts.set(avu_use_ts)  # Set an AVU with modified units.

                (create, modify) = self.check_timestamps(meta_ts, key=avu_use_ts.name)

                self.assertLess(create, now)  #  Ensure timestamps are in proper order.
                self.assertLess(now, modify)
            finally:
                if d:
                    d.unlink(force=True)
                helpers.remove_unused_metadata(session)

    def test_AVUs_populated_improperly_with_empties_or_nonstrings_fail_identically__issue_547(
        self,
    ):
        try:
            to_delete = []
            hc = helpers.home_collection(self.sess)
            mtemplate = iRODSMeta("some_name", "some_value", "some_units")
            for index in ("name", "value", "units"):
                for edge_case_arg in ("", 3):
                    # Empty units are permitted, ie. iRODSMeta(attr,value,'') and iRODSMeta(attr,value) are equivalent.
                    if edge_case_arg in ("", b"") and index == "units":
                        continue
                    for method in ("set", "add"):
                        data = self.sess.data_objects.create(
                            "{hc}/{index}_{edge_case_arg}_{method}_AZ__issue_547".format(
                                **locals()
                            )
                        )
                        to_delete.append(data)
                        m = iRODSMeta(*mtemplate)
                        setattr(m, index, edge_case_arg)
                        with self.assertRaises(Bad_AVU_Field):
                            getattr(data.metadata, method)(*m)
        finally:
            for d in to_delete:
                d.unlink(force=True)

    def test_nonstring_as_AVU_value_raises_an_error__issue_434(self):
        args = ("an_attribute", 0)
        with self.assertRaisesRegexp(Bad_AVU_Field, "incorrect type"):
            self.coll.metadata.set(*args)
        with self.assertRaisesRegexp(Bad_AVU_Field, "incorrect type"):
            self.coll.metadata.add(*args)

    def test_empty_string_as_AVU_value_raises_an_error__issue_434(self):
        args = ("an_attribute", "")
        with self.assertRaisesRegexp(Bad_AVU_Field, "zero-length"):
            self.coll.metadata.set(*args)
        with self.assertRaisesRegexp(Bad_AVU_Field, "zero-length"):
            self.coll.metadata.add(*args)

    @unittest.skipUnless(
        os.path.isfile(RODS_GENQUERY_INCLUDE_FILE_PATH), "need package irods-dev(el)"
    )
    def test_that_all_column_mappings_are_uniquely_and_properly_defined__issue_643(
        self,
    ):
        column_definitions_regex = re.compile(
            r"\s*#\s*define\s\s*(?P<column_name>COL_\w+)\s+(?P<column_value>[0-9]+)\s*"
        )

        # extract mappings from include file

        with open(RODS_GENQUERY_INCLUDE_FILE_PATH) as f:
            include_lines = f.readlines()

        server_column_defs = sorted(
            [
                (match.group("column_name"), int(match.group("column_value")))
                for match in (
                    column_definitions_regex.match(line) for line in include_lines
                )
                if match
            ]
        )

        # Extract all GenQuery1 name-to-number mappings from PRC model class definitions (some omit 'COL_' prefix, so allow some flexibility there.)
        prepend_col_prefix_if_needed = lambda s: (
            "COL_" + s if not s.startswith("COL_") else s
        )
        prc_column_defs = sorted(
            [
                (prepend_col_prefix_if_needed(i[1].icat_key), i[1].icat_id)
                for i in ModelBase.column_items
            ]
        )

        sr = set(a for a, b in set(prc_column_defs) - set(server_column_defs))
        allowed_outliers = {"COL_SQL_RESULT_VALUE"}
        self.assertEqual(sr, allowed_outliers)

    def test_thoroughgoing_correctness_of_genquery_result_column_mappings__issue_642(
        self,
    ):
        test_coll = self.coll
        meta_key = helpers.my_function_name()
        meta_value = "epoch_time"
        meta_units = str(time.time())
        execute_my_query = lambda: self.sess.query(
            CollectionMeta, Collection.name
        ).filter(Collection.name == test_coll.path, CollectionMeta.name == meta_key)
        # Make sure no iRODSMeta exists under the test key.
        del test_coll.metadata[meta_key]
        self.assertEqual(len(list(execute_my_query())), 0)
        try:
            test_coll.metadata.set(meta_key, meta_value, meta_units)
            for column, value in execute_my_query().one().items():
                # Prior to the #642 fix, at least one loop iteration will include an improper column mapping
                # from the COL_META_COLL_ATTR_UNITS to the numeric column ID and will cause a test failure:
                if column.icat_key == "COL_META_COLL_ATTR_UNITS":
                    self.assertEqual(value, meta_units)
        finally:
            del test_coll.metadata[meta_key]

    def test_xml_mode_addresses_odd_metadata_characters__issue_582(self):
        # By "odd" characters we mean those not customary for printing or for inclusion in the iRODS
        # STANDARD_XML protocol.
        session = self.sess
        from irods.helpers import xml_mode

        # Character '\x01' is unprintable and messes up the default(STANDARD_XML) parser.
        hexvalue = "53:6b:6f:70:65:43:61:6c:58:c3:af:c2:bf:c2:bd:c3:af:c2:bf:c2:bd:23:01:32:64:31"
        hex_list = [int(byte, 16) for byte in hexvalue.split(":")]
        string_value = "".join([chr(byte) for byte in hex_list])
        attr_str = "awesome"
        hc = helpers.home_collection(session)
        obj = session.collections.get(hc)
        try:
            with xml_mode("QUASI_XML"):
                # Each of these statements would generate an xml.etree.ElementTree.ParseError
                # if the STANDARD_XML parser were in use:
                obj.metadata.add(attr_str, string_value)
                self.assertEqual(
                    1,
                    len(
                        [
                            _
                            for _ in (
                                session.query(CollectionMeta).filter(
                                    Collection.name == hc,
                                    CollectionMeta.name == attr_str,
                                    CollectionMeta.value == string_value,
                                )
                            )
                        ]
                    ),
                )
        finally:
            with xml_mode("QUASI_XML"):
                # This statement also would generate a ParseError if the STANDARD_XML parser
                # in use, with the "odd" characters being present in the metadata value.
                del obj.metadata[attr_str]


if __name__ == "__main__":
    # let the tests find the parent irods lib
    sys.path.insert(0, os.path.abspath("../.."))
    unittest.main()