1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33
|
LoomValidator (class)
=====================
Validate the content of a Loom file against the file format specification and/or attrubute conventions.
.. highlight:: python
.. code-block:: python
>>> lv = loompy.LoomValidator()
>>> if not lv.validate(d+f, strictness="conventions"):
>>> for warn in lv.warnings:
>>> print("WARNING:", warn)
>>> for err in lv.errors:
>>> print("ERROR:", err)
WARNING: Optional global attribute 'Description' is missing
WARNING: Optional global attribute 'Journal' is missing
WARNING: Optional global attribute 'Authors' is missing
WARNING: Optional global attribute 'Title' is missing
WARNING: Optional global attribute 'Year' is missing
WARNING: Optional column attribute 'ClusterName' is missing
WARNING: Optional column attribute 'Valid' is missing
WARNING: Optional row attribute 'Valid' is missing
WARNING: Optional row attribute 'Selected' is missing
ERROR: Column attribute 'ClusterID' is missing
ERROR: Column attribute 'CellID' cannot contain duplicate values
ERROR: For help, see http://linnarssonlab.org/loompy/conventions/
.. autoclass:: loompy.LoomValidator
:special-members: __init__
:members:
:undoc-members:
|