File: index.html

package info (click to toggle)
python-louvain 0.16-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 964 kB
  • sloc: javascript: 8,547; python: 605; makefile: 89
file content (265 lines) | stat: -rw-r--r-- 14,786 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265

<!DOCTYPE html>

<html>
  <head>
    <meta charset="utf-8" />
    <meta name="viewport" content="width=device-width, initial-scale=1.0" />
    <title>Community detection for NetworkX’s documentation &#8212; Community detection for NetworkX 2 documentation</title>
    <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
    <link rel="stylesheet" href="_static/classic.css" type="text/css" />
    
    <script id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
    <script src="_static/jquery.js"></script>
    <script src="_static/underscore.js"></script>
    <script src="_static/doctools.js"></script>
    
    <link rel="index" title="Index" href="genindex.html" />
    <link rel="search" title="Search" href="search.html" />
    <link rel="next" title="community API" href="api.html" />
 
<script type="text/javascript">
var gaJsHost = (("https:" == document.location.protocol) ? "https://ssl." : "http://www.");
document.write(unescape("%3Cscript src='" + gaJsHost + "google-analytics.com/ga.js' type='text/javascript'%3E%3C/script%3E"));
</script>
<script type="text/javascript">
try{ 
var pageTracker = _gat._getTracker("UA-7251741-1");
pageTracker._trackPageview();
} catch(err) {} 
</script>

  </head><body>

<div style="background-color: white; text-align: left; padding: 10px 10px 15px 15px">
<a href="#">Community detection</a>
</div>

    <div class="related" role="navigation" aria-label="related navigation">
      <h3>Navigation</h3>
      <ul>
        <li class="right" style="margin-right: 10px">
          <a href="genindex.html" title="General Index"
             accesskey="I">index</a></li>
        <li class="right" >
          <a href="py-modindex.html" title="Python Module Index"
             >modules</a> |</li>
        <li class="right" >
          <a href="api.html" title="community API"
             accesskey="N">next</a> |</li>
        <li><a href="#">home</a>|&nbsp;</li>
        <li><a href="search.html">search</a>|&nbsp;</li>
       <li><a href="api.html">documentation </a> &raquo;</li>

        <li class="nav-item nav-item-this"><a href="">Community detection for NetworkX’s documentation</a></li> 
      </ul>
    </div>

      <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
        <div class="sphinxsidebarwrapper">
  <h3><a href="#">Table of Contents</a></h3>
  <ul>
<li><a class="reference internal" href="#">Community detection for NetworkX’s documentation</a></li>
<li><a class="reference internal" href="#example">Example :</a><ul>
<li><a class="reference internal" href="#as-a-command-line-utility">As a command line utility :</a></li>
<li><a class="reference internal" href="#as-python-module">As python module :</a></li>
</ul>
</li>
<li><a class="reference internal" href="#changelog">Changelog :</a></li>
<li><a class="reference internal" href="#license">License :</a></li>
<li><a class="reference internal" href="#indices-and-tables">Indices and tables</a></li>
</ul>

  <h4>Next topic</h4>
  <p class="topless"><a href="api.html"
                        title="next chapter">community API</a></p>
  <div role="note" aria-label="source link">
    <h3>This Page</h3>
    <ul class="this-page-menu">
      <li><a href="_sources/index.rst.txt"
            rel="nofollow">Show Source</a></li>
    </ul>
   </div>
<div id="searchbox" style="display: none" role="search">
  <h3 id="searchlabel">Quick search</h3>
    <div class="searchformwrapper">
    <form class="search" action="search.html" method="get">
      <input type="text" name="q" aria-labelledby="searchlabel" />
      <input type="submit" value="Go" />
    </form>
    </div>
</div>
<script>$('#searchbox').show(0);</script>
        </div>
      </div>

    <div class="document">
      <div class="documentwrapper">
        <div class="bodywrapper">
          <div class="body" role="main">
            
  <div class="toctree-wrapper compound">
<ul>
<li class="toctree-l1"><a class="reference internal" href="api.html">community API</a><ul class="simple">
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="api.html#indices-and-tables">Indices and tables</a></li>
</ul>
</div>
<div class="section" id="community-detection-for-networkx-s-documentation">
<h1>Community detection for NetworkX’s documentation<a class="headerlink" href="#community-detection-for-networkx-s-documentation" title="Permalink to this headline">¶</a></h1>
<p>This module implements community detection.</p>
<p>It uses the louvain method described in
Fast unfolding of communities in large networks,
Vincent D Blondel, Jean-Loup Guillaume, Renaud Lambiotte, Renaud Lefebvre,
Journal of Statistical Mechanics: Theory and Experiment 2008(10), P10008 (12pp)</p>
<p>It depends on Networkx to handle graph operations :
<a class="reference external" href="http://networkx.lanl.gov/">http://networkx.lanl.gov/</a></p>
<p>The program can be found in a repository where you can also report bugs :</p>
<a href="https://github.com/taynaud/python-louvain">https://github.com/taynaud/python-louvain</a></div>
<div class="section" id="example">
<h1>Example :<a class="headerlink" href="#example" title="Permalink to this headline">¶</a></h1>
<div class="section" id="as-a-command-line-utility">
<h2>As a command line utility :<a class="headerlink" href="#as-a-command-line-utility" title="Permalink to this headline">¶</a></h2>
<p>You should consider using the cpp version at
<a class="reference external" href="http://findcommunities.googlepages.com/">http://findcommunities.googlepages.com/</a> !</p>
<p>./community.py file.bin &gt; tree</p>
<p>where file.bin is a binary graph as generated by the convert utility of the cpp
version.</p>
<p>The generated file can then be used with the hierarchy utility of the cpp version.
Note that the program does not make many verifications about the arguments,
and is expecting a friendly use.</p>
</div>
<div class="section" id="as-python-module">
<h2>As python module :<a class="headerlink" href="#as-python-module" title="Permalink to this headline">¶</a></h2>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span><span class="kn">import</span> <span class="nn">community</span> <span class="k">as</span> <span class="nn">community_louvain</span>
<span class="kn">import</span> <span class="nn">matplotlib.cm</span> <span class="k">as</span> <span class="nn">cm</span>
<span class="kn">import</span> <span class="nn">matplotlib.pyplot</span> <span class="k">as</span> <span class="nn">plt</span>
<span class="kn">import</span> <span class="nn">networkx</span> <span class="k">as</span> <span class="nn">nx</span>

<span class="c1"># load the karate club graph</span>
<span class="n">G</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">karate_club_graph</span><span class="p">()</span>

<span class="c1">#first compute the best partition</span>
<span class="n">partition</span> <span class="o">=</span> <span class="n">community_louvain</span><span class="o">.</span><span class="n">best_partition</span><span class="p">(</span><span class="n">G</span><span class="p">)</span>

<span class="c1"># compute the best partition</span>
<span class="n">partition</span> <span class="o">=</span> <span class="n">community_louvain</span><span class="o">.</span><span class="n">best_partition</span><span class="p">(</span><span class="n">G</span><span class="p">)</span>

<span class="c1"># draw the graph</span>
<span class="n">pos</span> <span class="o">=</span> <span class="n">nx</span><span class="o">.</span><span class="n">spring_layout</span><span class="p">(</span><span class="n">G</span><span class="p">)</span>
<span class="c1"># color the nodes according to their partition</span>
<span class="n">cmap</span> <span class="o">=</span> <span class="n">cm</span><span class="o">.</span><span class="n">get_cmap</span><span class="p">(</span><span class="s1">&#39;viridis&#39;</span><span class="p">,</span> <span class="nb">max</span><span class="p">(</span><span class="n">partition</span><span class="o">.</span><span class="n">values</span><span class="p">())</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span>
<span class="n">nx</span><span class="o">.</span><span class="n">draw_networkx_nodes</span><span class="p">(</span><span class="n">G</span><span class="p">,</span> <span class="n">pos</span><span class="p">,</span> <span class="n">partition</span><span class="o">.</span><span class="n">keys</span><span class="p">(),</span> <span class="n">node_size</span><span class="o">=</span><span class="mi">40</span><span class="p">,</span>
                       <span class="n">cmap</span><span class="o">=</span><span class="n">cmap</span><span class="p">,</span> <span class="n">node_color</span><span class="o">=</span><span class="nb">list</span><span class="p">(</span><span class="n">partition</span><span class="o">.</span><span class="n">values</span><span class="p">()))</span>
<span class="n">nx</span><span class="o">.</span><span class="n">draw_networkx_edges</span><span class="p">(</span><span class="n">G</span><span class="p">,</span> <span class="n">pos</span><span class="p">,</span> <span class="n">alpha</span><span class="o">=</span><span class="mf">0.5</span><span class="p">)</span>
<span class="n">plt</span><span class="o">.</span><span class="n">show</span><span class="p">()</span>
</pre></div>
</div>
</div>
</div>
<div class="section" id="changelog">
<h1>Changelog :<a class="headerlink" href="#changelog" title="Permalink to this headline">¶</a></h1>
<ul class="simple">
<li><p>2020-12-27 : 0.15, Stop relabelling stable partitions, tests on power, doc fixes</p></li>
<li><p>2020-04-06 : 0.14, bugfixes (on resolution parameter), optimization on random state</p></li>
<li><p>2018-12-21 : 0.13, better random state, some files missing included, communities always in 0..N-1</p></li>
<li><p>2018-05-22 : 0.11, stop forcing networkx&lt;2.0 and expose module __version__</p></li>
<li><p>2018-01-02 : 0.10, bug fix: taking into account the node removal cost</p></li>
<li><p>2017-09-21 : 0.9, support networkx 2.0</p></li>
<li><p>2017-06-03 : 0.8, add randomization and bugfixes</p></li>
<li><p>2017-05-21 : 0.7, migrate to github, readthedocs and travis. Add resolution parameter to control community size, bugfixes</p></li>
<li><p>04/21/2011 : modifications to use networkx like documentation and use of test.</p></li>
<li><p>02/22/2011 : correction of a bug regarding edge weights</p></li>
<li><p>01/14/2010 : modification to use networkx 1.01 graph api and adding the possibility to start the algorithm with a given partition</p></li>
<li><p>04/10/2009 : increase of the speed of the detection by caching node degrees</p></li>
</ul>
</div>
<div class="section" id="license">
<h1>License :<a class="headerlink" href="#license" title="Permalink to this headline">¶</a></h1>
Copyright (c) 2009, Thomas Aynaud &lt;<a href="mailto:thomas.aynaud@lip6.fr">thomas.aynaud@lip6.fr</a>&gt;<br>
All rights reserved.<br><br>

Redistribution and use in source and binary forms, with or without modification,
are permitted provided that the following conditions are met:<br><br>

* Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.<br><br>

* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.<br><br>

* Neither the name of the python-louvain Developers nor the names of its
contributors may be used to endorse or promote products derived from this
software without specific prior written permission.<br><br><br>



THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR
CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY
OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE
OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.</div>
<div class="section" id="indices-and-tables">
<h1>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Permalink to this headline">¶</a></h1>
<ul class="simple">
<li><p><a class="reference internal" href="genindex.html"><span class="std std-ref">Index</span></a></p></li>
<li><p><a class="reference internal" href="py-modindex.html"><span class="std std-ref">Module Index</span></a></p></li>
<li><p><a class="reference internal" href="search.html"><span class="std std-ref">Search Page</span></a></p></li>
</ul>
</div>


            <div class="clearer"></div>
          </div>
        </div>
      </div>
      <div class="clearer"></div>
    </div>
    <div class="related" role="navigation" aria-label="related navigation">
      <h3>Navigation</h3>
      <ul>
        <li class="right" style="margin-right: 10px">
          <a href="genindex.html" title="General Index"
             >index</a></li>
        <li class="right" >
          <a href="py-modindex.html" title="Python Module Index"
             >modules</a> |</li>
        <li class="right" >
          <a href="api.html" title="community API"
             >next</a> |</li>
        <li><a href="#">home</a>|&nbsp;</li>
        <li><a href="search.html">search</a>|&nbsp;</li>
       <li><a href="api.html">documentation </a> &raquo;</li>

        <li class="nav-item nav-item-this"><a href="">Community detection for NetworkX’s documentation</a></li> 
      </ul>
    </div>

    <div class="footer" role="contentinfo">
        &#169; Copyright 2010, Thomas Aynaud.
      Created using <a href="https://www.sphinx-doc.org/">Sphinx</a> 3.4.1.
    </div>
<div class="footer">This page uses <a href="http://analytics.google.com/">
Google Analytics</a> to collect statistics. You can disable it by blocking
the JavaScript coming from www.google-analytics.com.
<script type="text/javascript">
  (function() {
    var ga = document.createElement('script');
    ga.src = ('https:' == document.location.protocol ?
              'https://ssl' : 'http://www') + '.google-analytics.com/ga.js';
    ga.setAttribute('async', 'true');
    document.documentElement.firstChild.appendChild(ga);
  })();
</script>
</div>

  </body>
</html>