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from mcstasscript.helper.mcstas_objects import DeclareVariable
from mcstasscript.helper.mcstas_objects import Component
from mcstasscript.instrument_diagnostics.diagnostics_instrument import DiagnosticsInstrument
from mcstasscript.instrument_diagnostics.view import View
from mcstasscript.instrument_diagnostics.plot_overview import PlotOverview
from mcstasscript.instrument_diagnostics import event_plotter
from mcstasscript.interface.functions import name_search
def sanitise_comp_name(comp_name):
if isinstance(comp_name, Component):
comp_name = Component.name
if not isinstance(comp_name, str):
raise ValueError("comp_name should be a string or component object!")
return comp_name
class DiagnosticsPoint:
def __init__(self, instr, comp_name, before=True, rays=50000):
comp_name = sanitise_comp_name(comp_name)
try:
instr.get_component(comp_name)
except KeyError:
raise KeyError("Component '" + comp_name + "' not found in instrument.")
self.component = comp_name
self.before = before # False for after
if isinstance(rays, str):
if not rays == "all":
raise ValueError("The ray keyword for a point should be all or an integer.")
else:
rays = int(rays)
self.rays = rays
# Attributes set by add_monitors
self.filename = None
# Attributes set by read_data
self.recorded_rays = None
def set_filename(self, filename):
self.filename = filename
def set_recorded_rays(self, rays):
self.recorded_rays = rays
def __eq__(self, other):
return self.component == other.component and self.before == other.before
def __repr__(self):
string = "Diagnostics point "
if self.before:
string += "before: "
else:
string += "after: "
string += self.component.ljust(25)
string += " - rays: "
if self.recorded_rays is not None:
string += str(self.recorded_rays)
string += " / "
string += str(self.rays)
return string
class BeamDiagnostics(DiagnosticsInstrument):
def __init__(self, instr):
super().__init__(instr)
# points to investigate with options
self.points = []
self.ordered_point_list = []
# flags for monitor_nD user variables
self.flags = []
self.monitor_names = []
self.views = []
self.data = None
self.event_plotters = []
def __repr__(self):
string = f"Instrument diagnostics for: {self.instr.name}\n"
string += "Diagnostics points: \n"
if len(self.points) == 0:
string += " No diagnostics points yet\n"
for point in self.points:
string += " " + point.__repr__() + "\n"
string += "Views: \n"
if len(self.views) == 0:
string += " No views yet\n"
for view in self.views:
string += " " + view.__repr__() + "\n"
if len(self.flags) != 0:
string += "Recording following user variables:\n"
for flag in self.flags:
string += " " + str(flag) + "\n"
if self.data is None:
string += "Does not yet contain simulated data"
else:
string += "Does contain simulated data"
return string
def add_flag(self, flag):
"""
Adds flag to be monitored in event list, maximum of 3 allowed
The flag must be available in declared variables or user vars.
Parameters:
flag: str
str with variable name to be recorded to event dataset
"""
if not isinstance(flag, str):
raise ValueError("flag has to be a string.")
# find declare and user_var names in instrument
names = [x.name for x in self.instr.declare_list
if isinstance(x, DeclareVariable)]
names += [x.name for x in self.instr.user_var_list
if isinstance(x, DeclareVariable)]
if flag not in names:
raise ValueError(f"flag {flag} was not found in declared "
f"variables or uservars of the instrument.")
if len(self.flags) >= 3:
raise ValueError("Can't add more than three flags")
self.flags.append(flag)
def clear_flags(self):
"""
Clears flags
"""
self.flags = []
def show_flags(self):
"""
Shows list of current flags
"""
if self.flags is not None:
for index, flag in enumerate(self.flags):
print(f" user{index+1}={flag}")
def add_point(self, before=None, after=None, rays=50000):
"""
Adds point in which the beam is investigated with given number of rays
Can be before and/or after components, this is chosen by using the
appropriate keyword argument.
Parameters:
before : str or component instance
Reference to component beam should be monitored just before
after : str or component instance
Reference to component beam should be monitored just after
rays : int or "all"
Number of rays to record, either integer or the string "all"
"""
if before is None and after is None:
raise ValueError("Specify either before or after with component name.")
if before is not None:
self._add_diagnostics_point(comp_name=before, before=True, rays=rays)
if after is not None:
self._add_diagnostics_point(comp_name=after, before=False, rays=rays)
def _add_diagnostics_point(self, comp_name, before, rays):
"""
Internal function to add the DiagnosticsPoint to list
"""
point = DiagnosticsPoint(self.instr, comp_name=comp_name, before=before, rays=rays)
if point in self.points:
# overwrite that point
index = self.points.index(point)
self.points[index] = point
else:
# add point to list
self.points.append(point)
def remove_point(self, before=None, after=None):
"""
Removes a point from the list
Specify whether the point in question is before or after the
given component name or instance by using the appropriate
keyword argument
Parameter:
before : str or component instance
Name or component instance for which point before should be removed
after : str or component instance
Name or component instance for which point after should be removed
"""
if before is None and after is None:
raise ValueError("Specify either before or after with component name.")
if before is not None:
before = sanitise_comp_name(before)
for index, point in enumerate(self.points):
if point.component == before and point.before:
del self.points[index]
if after is not None:
after = sanitise_comp_name(after)
for index, point in enumerate(self.points):
if point.component == after and not point.before:
del self.points[index]
def clear_points(self):
"""
Remove all points
"""
self.points = []
def show_points(self):
"""
Shows current diagnostics points
"""
for point in self.points:
print(point)
def add_view(self, axis1, axis2=None, bins=100, same_scale=False, **kwargs):
"""
Add a view with one or two axes that will be shown at all diagnostics points
Parameters:
axis1: str
Name of parameter for first axis
axis2: str
Name of parameter for second axis
bins : int or list of length 2
Number of bins for histogram (can be list of length 2 for 2D)
same_scale : bool
Select if the same scale should be ensured for all points with this view
"""
view = View(axis1=axis1, axis2=axis2, bins=bins, same_scale=same_scale, **kwargs)
self.views.append(view)
def clear_views(self):
"""
Clear list of views
"""
self.views = []
def show_views(self):
"""
Shows views
"""
for view in self.views:
print(view)
def add_monitors(self):
"""
Adds monitors as specified by list of diagnostics points
The method sorts the points with the component sequence so the
resulting plots are in the correct order.
"""
comp_names = [x.name for x in self.instr.make_component_subset()]
self.monitor_names = []
self.ordered_point_list = []
point_names = [x.component for x in self.points]
for name in comp_names:
before_point = None
after_point = None
if name in point_names:
for point in self.points:
if point.component == name:
if point.before:
before_point = point
else:
after_point = point
if before_point is not None:
self.ordered_point_list.append(before_point)
if after_point is not None:
self.ordered_point_list.append(after_point)
for point in self.ordered_point_list:
comp = self.instr.get_component(point.component)
filename = self.add_monitor(point, comp)
point.set_filename(filename)
def add_monitor(self, point, comp_instance):
"""
Adds monitor_nD event monitor to diagnostics instrument for given point
Needs point and component instance that match
Parameters:
point : DiagnosticsPoint
Point for which monitor should be added
comp_instance : Component
Component instance relative to which the monitor should be placed
"""
if not point.component == comp_instance.name:
raise RuntimeError("Given point and component instance should match!")
user_vars = [None, None, None]
flags_str = ""
for index, flag in enumerate(self.flags):
flags_str += " user" + str(index+1)
if self.instr.mccode_version == 2:
# Monitor_nD in McStas 2.X needs to be a raw variable
user_vars[index] = flag
else:
# Monitor_nD in McStas 3.X (and onwards) needs to be a string
user_vars[index] = '"' + flag + '"'
if isinstance(point.rays, (float, int)):
ray_value = point.rays
if self.instr.mccode_version == 3:
ray_value += 1 # In McStas 3.0 Monitor_nD grabs one event too few
ray_str = str(int(ray_value)) # Monitor_nD seems to record one ray less than requested
else:
ray_str = point.rays # Case of rays set to all
if point.before:
name = "Diag_before_" + point.component
options = f'"square boarders n x y z vx vy vz t{flags_str}, list {ray_str}"'
mon = self.instr.add_component(name, "Monitor_nD", before=point.component)
else:
name = "Diag_after_" + point.component
options = f'"previous n x y z vx vy vz t{flags_str}, list {ray_str}"'
mon = self.instr.add_component(name, "Monitor_nD", after=point.component)
mon.set_parameters(restore_neutron=1,
xwidth=100, yheight=100,
options=options,
user1=user_vars[0], user2=user_vars[1], user3=user_vars[2],
filename='"' + name + ".diag" + '"')
mon.set_AT(comp_instance.AT_data, RELATIVE=comp_instance.AT_reference)
if comp_instance.ROTATED_specified:
mon.set_ROTATED(comp_instance.ROTATED_data, RELATIVE=comp_instance.ROTATED_reference)
return name
def run(self):
"""
Runs diagnostics with all included points
Saves data in data attribute and the resulting instrument can be found
in the instr attribute
"""
self.reset_instr()
self.remove_previous_use()
self.add_monitors()
self.correct_target_index()
self.data = self.instr.backengine()
self.read_data()
def read_data(self):
"""
Reads the generated data and organizes it as event plotter instances
"""
self.event_plotters = []
for point in self.ordered_point_list:
try:
event_data = name_search(point.filename, self.data)
except NameError:
# Data was not generated, no neutrons reached it or simulation failed
continue
point.set_recorded_rays(event_data.metadata.total_N)
plotter = event_plotter.EventPlotter(point.filename, event_data,
flag_info=self.flags)
self.event_plotters.append(plotter)
def plot(self):
"""
Plots the generated data for all points with all views
"""
if len(self.event_plotters) == 0:
if len(self.views) == 0:
print("No data to plot! Add views and run.")
else:
print("No data to plot! Use the run method to generate data.")
overview = PlotOverview(self.event_plotters, self.views)
overview.plot_all()
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