1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
|
"""MNE software for MEG and EEG data analysis."""
# PEP0440 compatible formatted version, see:
# https://www.python.org/dev/peps/pep-0440/
#
# Generic release markers:
# X.Y
# X.Y.Z # For bugfix releases
#
# Admissible pre-release markers:
# X.YaN # Alpha release
# X.YbN # Beta release
# X.YrcN # Release Candidate
# X.Y # Final release
#
# Dev branch marker is: 'X.Y.devN' where N is an integer.
#
__version__ = '0.17.0'
# have to import verbose first since it's needed by many things
from .utils import (set_log_level, set_log_file, verbose, set_config,
get_config, get_config_path, set_cache_dir,
set_memmap_min_size, grand_average, sys_info, open_docs)
from .io.pick import (pick_types, pick_channels,
pick_channels_regexp, pick_channels_forward,
pick_types_forward, pick_channels_cov,
pick_channels_evoked, pick_info)
from .io.base import concatenate_raws
from .io.meas_info import create_info, Info
from .io.proj import Projection
from .io.kit import read_epochs_kit
from .io.eeglab import read_epochs_eeglab
from .io.reference import (set_eeg_reference, set_bipolar_reference,
add_reference_channels)
from .bem import (make_sphere_model, make_bem_model, make_bem_solution,
read_bem_surfaces, write_bem_surfaces,
read_bem_solution, write_bem_solution)
from .cov import (read_cov, write_cov, Covariance, compute_raw_covariance,
compute_covariance, whiten_evoked, make_ad_hoc_cov)
from .event import (read_events, write_events, find_events, merge_events,
pick_events, make_fixed_length_events, concatenate_events,
find_stim_steps, AcqParserFIF)
from .forward import (read_forward_solution, apply_forward, apply_forward_raw,
average_forward_solutions, Forward,
write_forward_solution, make_forward_solution,
convert_forward_solution, make_field_map,
make_forward_dipole, use_coil_def)
from .source_estimate import (read_source_estimate, MixedSourceEstimate,
SourceEstimate, VectorSourceEstimate,
VolSourceEstimate, morph_data,
morph_data_precomputed,
grade_to_tris,
spatial_src_connectivity,
spatial_tris_connectivity,
spatial_dist_connectivity,
spatial_inter_hemi_connectivity,
spatio_temporal_src_connectivity,
spatio_temporal_tris_connectivity,
spatio_temporal_dist_connectivity,
save_stc_as_volume, extract_label_time_course)
from .surface import (read_surface, write_surface, decimate_surface, read_tri,
read_morph_map, get_head_surf, get_meg_helmet_surf)
from .morph import (SourceMorph, read_source_morph, grade_to_vertices,
compute_morph_matrix, compute_source_morph)
from .source_space import (read_source_spaces, vertex_to_mni,
head_to_mni, head_to_mri,
write_source_spaces, setup_source_space,
setup_volume_source_space, SourceSpaces,
add_source_space_distances, morph_source_spaces,
get_volume_labels_from_aseg,
get_volume_labels_from_src)
from .annotations import Annotations, read_annotations, events_from_annotations
from .epochs import (BaseEpochs, Epochs, EpochsArray, read_epochs,
concatenate_epochs)
from .evoked import Evoked, EvokedArray, read_evokeds, write_evokeds, combine_evoked
from .label import (read_label, label_sign_flip,
write_label, stc_to_label, grow_labels, Label, split_label,
BiHemiLabel, read_labels_from_annot, write_labels_to_annot, random_parcellation)
from .misc import parse_config, read_reject_parameters
from .coreg import (create_default_subject, scale_bem, scale_mri, scale_labels,
scale_source_space)
from .transforms import (read_trans, write_trans,
transform_surface_to, Transform)
from .proj import (read_proj, write_proj, compute_proj_epochs,
compute_proj_evoked, compute_proj_raw, sensitivity_map)
from .selection import read_selection
from .dipole import read_dipole, Dipole, DipoleFixed, fit_dipole
from .channels import equalize_channels, rename_channels, find_layout
from .report import Report, open_report
from .io import read_epochs_fieldtrip, read_evoked_fieldtrip
from . import beamformer
from . import channels
from . import chpi
from . import commands
from . import connectivity
from . import coreg
from . import cuda
from . import datasets
from . import dipole
from . import epochs
from . import event
from . import externals
from . import io
from . import filter
from . import gui
from . import minimum_norm
from . import preprocessing
from . import simulation
from . import stats
from . import time_frequency
from . import viz
from . import decoding
from . import realtime
# initialize logging
set_log_level(None, False)
set_log_file()
|
