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#!/usr/bin/env python
# Authors: Teon Brooks <teon.brooks@gmail.com>
"""Import KIT / NYU data to fif file.
example usage: $ mne kit2fiff --input input.sqd --output output.fif
Use without arguments to invoke GUI: $ mne kt2fiff
"""
import sys
import mne
from mne.io import read_raw_kit
from mne.utils import ETSContext
def run():
"""Run command."""
from mne.commands.utils import get_optparser
parser = get_optparser(__file__)
parser.add_option('--input', dest='input_fname',
help='Input data file name', metavar='filename')
parser.add_option('--mrk', dest='mrk_fname',
help='MEG Marker file name', metavar='filename')
parser.add_option('--elp', dest='elp_fname',
help='Headshape points file name', metavar='filename')
parser.add_option('--hsp', dest='hsp_fname',
help='Headshape file name', metavar='filename')
parser.add_option('--stim', dest='stim',
help='Colon Separated Stimulus Trigger Channels',
metavar='chs')
parser.add_option('--slope', dest='slope', help='Slope direction',
metavar='slope')
parser.add_option('--stimthresh', dest='stimthresh', default=1,
help='Threshold value for trigger channels',
metavar='value')
parser.add_option('--output', dest='out_fname',
help='Name of the resulting fiff file',
metavar='filename')
parser.add_option('--debug', dest='debug', action='store_true',
default=False,
help='Set logging level for terminal output to debug')
options, args = parser.parse_args()
if options.debug:
mne.set_log_level('debug')
input_fname = options.input_fname
if input_fname is None:
with ETSContext():
mne.gui.kit2fiff()
sys.exit(0)
hsp_fname = options.hsp_fname
elp_fname = options.elp_fname
mrk_fname = options.mrk_fname
stim = options.stim
slope = options.slope
stimthresh = options.stimthresh
out_fname = options.out_fname
if isinstance(stim, str):
stim = map(int, stim.split(':'))
raw = read_raw_kit(input_fname=input_fname, mrk=mrk_fname, elp=elp_fname,
hsp=hsp_fname, stim=stim, slope=slope,
stimthresh=stimthresh)
raw.save(out_fname)
raw.close()
sys.exit(0)
is_main = (__name__ == '__main__')
if is_main:
run()
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