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import numpy as np
from numpy.testing import assert_array_almost_equal
from nose.tools import assert_true
from mne.connectivity import phase_slope_index
def test_psi():
"""Test Phase Slope Index (PSI) estimation"""
sfreq = 50.
n_signals = 3
n_epochs = 10
n_times = 500
rng = np.random.RandomState(42)
data = rng.randn(n_epochs, n_signals, n_times)
# simulate time shifts
for i in range(n_epochs):
data[i, 1, 10:] = data[i, 0, :-10] # signal 0 is ahead
data[i, 2, :-10] = data[i, 0, 10:] # signal 2 is ahead
psi, freqs, times, n_epochs, n_tapers = phase_slope_index(data,
mode='fourier', sfreq=sfreq)
assert_true(psi[1, 0, 0] < 0)
assert_true(psi[2, 0, 0] > 0)
indices = (np.array([0]), np.array([1]))
psi_2, freqs, times, n_epochs, n_tapers = phase_slope_index(data,
mode='fourier', sfreq=sfreq, indices=indices)
# the measure is symmetric (sign flip)
assert_array_almost_equal(psi_2[0, 0], -psi[1, 0, 0])
cwt_freqs = np.arange(5., 20, 0.5)
psi_cwt, freqs, times, n_epochs, n_tapers = phase_slope_index(data,
mode='cwt_morlet', sfreq=sfreq, cwt_frequencies=cwt_freqs,
indices=indices)
assert_true(np.all(psi_cwt > 0))
assert_true(psi_cwt.shape[-1] == n_times)
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