File: test_ems.py

package info (click to toggle)
python-mne 0.8.6%2Bdfsg-2
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd
  • size: 87,892 kB
  • ctags: 6,639
  • sloc: python: 54,697; makefile: 165; sh: 15
file content (58 lines) | stat: -rw-r--r-- 2,006 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
# Author: Denis A. Engemann <d.engemann@gmail.com>
#
# License: BSD (3-clause)

import os.path as op

from nose.tools import assert_equal, assert_raises

from mne import io, Epochs, read_events, pick_types
from mne.utils import _TempDir, requires_sklearn
from mne.decoding import compute_ems

tempdir = _TempDir()

data_dir = op.join(op.dirname(__file__), '..', '..', 'io', 'tests', 'data')
curdir = op.join(op.dirname(__file__))

raw_fname = op.join(data_dir, 'test_raw.fif')
event_name = op.join(data_dir, 'test-eve.fif')

tmin, tmax = -0.2, 0.5
event_id = dict(aud_l=1, vis_l=3)


@requires_sklearn
def test_ems():
    """Test event-matched spatial filters"""
    raw = io.Raw(raw_fname, preload=False)

    # create unequal number of events
    events = read_events(event_name)
    events[-2, 2] = 3
    picks = pick_types(raw.info, meg=True, stim=False, ecg=False,
                            eog=False, exclude='bads')
    picks = picks[1:13:3]
    epochs = Epochs(raw, events, event_id, tmin, tmax, picks=picks,
                    baseline=(None, 0), preload=True)
    assert_raises(ValueError, compute_ems, epochs, ['aud_l', 'vis_l'])
    epochs.equalize_event_counts(epochs.event_id, copy=False)

    assert_raises(KeyError, compute_ems, epochs, ['blah', 'hahah'])
    surrogates, filters, conditions = compute_ems(epochs)
    assert_equal(list(set(conditions)), [1, 3])

    events = read_events(event_name)
    event_id2 = dict(aud_l=1, aud_r=2, vis_l=3)
    epochs = Epochs(raw, events, event_id2, tmin, tmax, picks=picks,
                    baseline=(None, 0), preload=True)
    epochs.equalize_event_counts(epochs.event_id, copy=False)

    n_expected = sum([len(epochs[k]) for k in ['aud_l', 'vis_l']])

    assert_raises(ValueError, compute_ems, epochs)
    surrogates, filters, conditions = compute_ems(epochs, ['aud_r', 'vis_l'])
    assert_equal(n_expected, len(surrogates))
    assert_equal(n_expected, len(conditions))
    assert_equal(list(set(conditions)), [2, 3])
    raw.close()