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"""Mayavi/traits GUI visualization elements"""
# Authors: Christian Brodbeck <christianbrodbeck@nyu.edu>
#
# License: BSD (3-clause)
import numpy as np
# allow import without traits
try:
from mayavi.mlab import pipeline, text3d
from mayavi.modules.glyph import Glyph
from mayavi.modules.surface import Surface
from mayavi.sources.vtk_data_source import VTKDataSource
from mayavi.tools.mlab_scene_model import MlabSceneModel
from pyface.api import error
from traits.api import (HasTraits, HasPrivateTraits, on_trait_change,
cached_property, Instance, Property, Array, Bool,
Button, Color, Enum, Float, Int, List, Range, Str)
from traitsui.api import View, Item, Group, HGroup, VGrid, VGroup
except:
from ..utils import trait_wraith
HasTraits = object
HasPrivateTraits = object
cached_property = trait_wraith
on_trait_change = trait_wraith
MlabSceneModel = trait_wraith
Array = trait_wraith
Bool = trait_wraith
Button = trait_wraith
Color = trait_wraith
Enum = trait_wraith
Float = trait_wraith
Instance = trait_wraith
Int = trait_wraith
List = trait_wraith
Property = trait_wraith
Range = trait_wraith
Str = trait_wraith
View = trait_wraith
Item = trait_wraith
Group = trait_wraith
HGroup = trait_wraith
VGrid = trait_wraith
VGroup = trait_wraith
Glyph = trait_wraith
Surface = trait_wraith
VTKDataSource = trait_wraith
from ..transforms import apply_trans
headview_item = Item('headview', style='custom', show_label=False)
headview_borders = VGroup(Item('headview', style='custom', show_label=False),
show_border=True, label='View')
defaults = {'mri_fid_scale': 1e-2, 'hsp_fid_scale': 3e-2,
'hsp_fid_opacity': 0.3, 'hsp_points_scale': 4e-3,
'mri_color': (252, 227, 191), 'hsp_point_color': (255, 255, 255),
'lpa_color': (255, 0, 0), 'nasion_color': (0, 255, 0),
'rpa_color': (0, 0, 255)}
class HeadViewController(HasTraits):
"""
Set head views for Anterior-Left-Superior coordinate system
Parameters
----------
system : 'RAS' | 'ALS' | 'ARI'
Coordinate system described as initials for directions associated with
the x, y, and z axes. Relevant terms are: Anterior, Right, Left,
Superior, Inferior.
"""
system = Enum("RAS", "ALS", "ARI", desc="Coordinate system: directions of "
"the x, y, and z axis.")
right = Button()
front = Button()
left = Button()
top = Button()
scale = Float(0.16)
scene = Instance(MlabSceneModel)
view = View(VGrid('0', 'top', '0', Item('scale', label='Scale',
show_label=True),
'right', 'front', 'left', show_labels=False, columns=4))
@on_trait_change('scene.activated')
def _init_view(self):
self.scene.parallel_projection = True
# apparently scene,activated happens several times
if self.scene.renderer:
self.sync_trait('scale', self.scene.camera, 'parallel_scale')
# and apparently this does not happen by default:
self.on_trait_change(self.scene.render, 'scale')
@on_trait_change('top,left,right,front')
def on_set_view(self, view, _):
if self.scene is None:
return
system = self.system
kwargs = None
if system == 'ALS':
if view == 'front':
kwargs = dict(azimuth=0, elevation=90, roll=-90)
elif view == 'left':
kwargs = dict(azimuth=90, elevation=90, roll=180)
elif view == 'right':
kwargs = dict(azimuth=-90, elevation=90, roll=0)
elif view == 'top':
kwargs = dict(azimuth=0, elevation=0, roll=-90)
elif system == 'RAS':
if view == 'front':
kwargs = dict(azimuth=90, elevation=90, roll=180)
elif view == 'left':
kwargs = dict(azimuth=180, elevation=90, roll=90)
elif view == 'right':
kwargs = dict(azimuth=0, elevation=90, roll=270)
elif view == 'top':
kwargs = dict(azimuth=90, elevation=0, roll=180)
elif system == 'ARI':
if view == 'front':
kwargs = dict(azimuth=0, elevation=90, roll=90)
elif view == 'left':
kwargs = dict(azimuth=-90, elevation=90, roll=180)
elif view == 'right':
kwargs = dict(azimuth=90, elevation=90, roll=0)
elif view == 'top':
kwargs = dict(azimuth=0, elevation=180, roll=90)
else:
raise ValueError("Invalid system: %r" % system)
if kwargs is None:
raise ValueError("Invalid view: %r" % view)
self.scene.mlab.view(distance=None, reset_roll=True,
figure=self.scene.mayavi_scene, **kwargs)
class Object(HasPrivateTraits):
"""Represents a 3d object in a mayavi scene"""
points = Array(float, shape=(None, 3))
trans = Array()
name = Str
scene = Instance(MlabSceneModel, ())
src = Instance(VTKDataSource)
color = Color()
rgbcolor = Property(depends_on='color')
point_scale = Float(10, label='Point Scale')
opacity = Range(low=0., high=1., value=1.)
visible = Bool(True)
@cached_property
def _get_rgbcolor(self):
if hasattr(self.color, 'Get'): # wx
color = tuple(v / 255. for v in self.color.Get())
else:
color = self.color.getRgbF()[:3]
return color
@on_trait_change('trans,points')
def _update_points(self):
"""Update the location of the plotted points"""
if not hasattr(self.src, 'data'):
return
trans = self.trans
if np.any(trans):
if trans.ndim == 0 or trans.shape == (3,) or trans.shape == (1, 3):
pts = self.points * trans
elif trans.shape == (3, 3):
pts = np.dot(self.points, trans.T)
elif trans.shape == (4, 4):
pts = apply_trans(trans, self.points)
else:
err = ("trans must be a scalar, a length 3 sequence, or an "
"array of shape (1,3), (3, 3) or (4, 4). "
"Got %s" % str(trans))
error(None, err, "Display Error")
raise ValueError(err)
else:
pts = self.points
self.src.data.points = pts
class PointObject(Object):
"""Represents a group of individual points in a mayavi scene"""
label = Bool(False, enabled_when='visible')
text3d = List
glyph = Instance(Glyph)
resolution = Int(8)
def __init__(self, view='points', *args, **kwargs):
"""
Parameters
----------
view : 'points' | 'cloud'
Whether the view options should be tailored to individual points
or a point cloud.
"""
self._view = view
super(PointObject, self).__init__(*args, **kwargs)
def default_traits_view(self):
color = Item('color', show_label=False)
scale = Item('point_scale', label='Size')
if self._view == 'points':
visible = Item('visible', label='Show', show_label=True)
view = View(HGroup(visible, color, scale, 'label'))
elif self._view == 'cloud':
visible = Item('visible', show_label=False)
view = View(HGroup(visible, color, scale))
else:
raise ValueError("PointObject(view = %r)" % self._view)
return view
@on_trait_change('label')
def _show_labels(self, show):
self.scene.disable_render = True
while self.text3d:
text = self.text3d.pop()
text.remove()
if show:
fig = self.scene.mayavi_scene
for i, pt in enumerate(np.array(self.src.data.points)):
x, y, z = pt
t = text3d(x, y, z, ' %i' % i, scale=.01, color=self.rgbcolor,
figure=fig)
self.text3d.append(t)
self.scene.disable_render = False
@on_trait_change('visible')
def _on_hide(self):
if not self.visible:
self.label = False
@on_trait_change('scene.activated')
def _plot_points(self):
"""Add the points to the mayavi pipeline"""
# _scale = self.scene.camera.parallel_scale
if hasattr(self.glyph, 'remove'):
self.glyph.remove()
if hasattr(self.src, 'remove'):
self.src.remove()
fig = self.scene.mayavi_scene
x, y, z = self.points.T
scatter = pipeline.scalar_scatter(x, y, z)
glyph = pipeline.glyph(scatter, color=self.rgbcolor, figure=fig,
scale_factor=self.point_scale, opacity=1.,
resolution=self.resolution)
self.src = scatter
self.glyph = glyph
self.sync_trait('point_scale', self.glyph.glyph.glyph, 'scale_factor')
self.sync_trait('rgbcolor', self.glyph.actor.property, 'color',
mutual=False)
self.sync_trait('visible', self.glyph)
self.sync_trait('opacity', self.glyph.actor.property)
self.on_trait_change(self._update_points, 'points')
# self.scene.camera.parallel_scale = _scale
def _resolution_changed(self, new):
if not self.glyph:
return
self.glyph.glyph.glyph_source.glyph_source.phi_resolution = new
self.glyph.glyph.glyph_source.glyph_source.theta_resolution = new
class SurfaceObject(Object):
"""Represents a solid object in a mayavi scene
Notes
-----
Doesn't automatically update plot because update requires both
:attr:`points` and :attr:`tri`. Call :meth:`plot` after updateing both
attributes.
"""
rep = Enum("Surface", "Wireframe")
tri = Array(int, shape=(None, 3))
surf = Instance(Surface)
view = View(HGroup(Item('visible', show_label=False),
Item('color', show_label=False), Item('opacity')))
def clear(self):
if hasattr(self.src, 'remove'):
self.src.remove()
if hasattr(self.surf, 'remove'):
self.surf.remove()
self.reset_traits(['src', 'surf'])
@on_trait_change('scene.activated')
def plot(self):
"""Add the points to the mayavi pipeline"""
_scale = self.scene.camera.parallel_scale
self.clear()
if not np.any(self.tri):
return
fig = self.scene.mayavi_scene
x, y, z = self.points.T
if self.rep == 'Wireframe':
rep = 'wireframe'
else:
rep = 'surface'
src = pipeline.triangular_mesh_source(x, y, z, self.tri, figure=fig)
surf = pipeline.surface(src, figure=fig, color=self.rgbcolor,
opacity=self.opacity,
representation=rep, line_width=1)
self.src = src
self.surf = surf
self.sync_trait('visible', self.surf, 'visible')
self.sync_trait('rgbcolor', self.surf.actor.property, 'color',
mutual=False)
self.sync_trait('opacity', self.surf.actor.property, 'opacity')
self.scene.camera.parallel_scale = _scale
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