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# Author: Martin Luessi <mluessi@nmr.mgh.harvard.edu>
#
# License: Simplified BSD
import os.path as op
import numpy as np
from nose.tools import assert_true
from numpy.testing import assert_array_almost_equal
from mne.datasets import sample
from mne import read_cov, read_forward_solution, read_evokeds
from mne.cov import regularize
from mne.inverse_sparse import gamma_map
data_path = sample.data_path(download=False)
fname_evoked = op.join(data_path, 'MEG', 'sample', 'sample_audvis-ave.fif')
fname_cov = op.join(data_path, 'MEG', 'sample', 'sample_audvis-cov.fif')
fname_fwd = op.join(data_path, 'MEG', 'sample',
'sample_audvis-eeg-oct-6-fwd.fif')
@sample.requires_sample_data
def test_gamma_map():
"""Test Gamma MAP inverse"""
forward = read_forward_solution(fname_fwd, force_fixed=False,
surf_ori=True)
evoked = read_evokeds(fname_evoked, condition=0, baseline=(None, 0))
evoked.crop(tmin=0, tmax=0.3)
cov = read_cov(fname_cov)
cov = regularize(cov, evoked.info)
alpha = 0.2
stc = gamma_map(evoked, forward, cov, alpha, tol=1e-5,
xyz_same_gamma=True, update_mode=1)
idx = np.argmax(np.sum(stc.data ** 2, axis=1))
assert_true(np.concatenate(stc.vertno)[idx] == 96397)
stc = gamma_map(evoked, forward, cov, alpha, tol=1e-5,
xyz_same_gamma=False, update_mode=1)
idx = np.argmax(np.sum(stc.data ** 2, axis=1))
assert_true(np.concatenate(stc.vertno)[idx] == 82010)
# force fixed orientation
stc, res = gamma_map(evoked, forward, cov, alpha, tol=1e-5,
xyz_same_gamma=False, update_mode=2,
loose=None, return_residual=True)
idx = np.argmax(np.sum(stc.data ** 2, axis=1))
assert_true(np.concatenate(stc.vertno)[idx] == 83398)
assert_array_almost_equal(evoked.times, res.times)
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