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.. _changes_0_11:
Version 0.11 (2015-12-24)
-------------------------
Changelog
~~~~~~~~~
- Maxwell filtering (SSS) implemented in :func:`mne.preprocessing.maxwell_filter` by `Mark Wronkiewicz`_ as part of Google Summer of Code, with help from `Samu Taulu`_, `Jukka Nenonen`_, and `Jussi Nurminen`_. Our implementation includes support for:
- Fine calibration
- Cross-talk correction
- Temporal SSS (tSSS)
- Head position translation
- Internal component regularization
- Compensation for movements using Maxwell filtering on epoched data in :func:`mne.epochs.average_movements` by `Eric Larson`_ and `Samu Taulu`_
- Add reader for Nicolet files in :func:`mne.io.read_raw_nicolet` by `Jaakko Leppakangas`_
- Add FIFF persistence for ICA labels by `Denis Engemann`_
- Display ICA labels in :func:`mne.viz.plot_ica_scores` and :func:`mne.viz.plot_ica_sources` (for evoked objects) by `Denis Engemann`_
- Plot spatially color coded lines in :func:`mne.Evoked.plot` by `Jona Sassenhagen`_ and `Jaakko Leppakangas`_
- Add reader for CTF data in :func:`mne.io.read_raw_ctf` by `Eric Larson`_
- Add support for Brainvision v2 in :func:`mne.io.read_raw_brainvision` by `Teon Brooks`_
- Improve speed of generalization across time ``mne.decoding.GeneralizationAcrossTime`` decoding up to a factor of seven by `Jean-Remi King`_ and `Federico Raimondo`_ and `Denis Engemann`_.
- Add the explained variance for each principal component, ``explained_var``, key to the :class:`mne.Projection` by `Teon Brooks`_
- Added methods ``mne.Epochs.add_eeg_average_proj``, ``mne.io.Raw.add_eeg_average_proj``, and ``mne.Evoked.add_eeg_average_proj`` to add an average EEG reference.
- Add reader for EEGLAB data in :func:`mne.io.read_raw_eeglab` and :func:`mne.read_epochs_eeglab` by `Mainak Jas`_
BUG
~~~
- Fix bug that prevented homogeneous bem surfaces to be displayed in HTML reports by `Denis Engemann`_
- Added safeguards against ``None`` and negative values in reject and flat parameters in :class:`mne.Epochs` by `Eric Larson`_
- Fix train and test time window-length in ``mne.decoding.GeneralizationAcrossTime`` by `Jean-Remi King`_
- Added lower bound in :func:`mne.stats.linear_regression` on p-values ``p_val`` (and resulting ``mlog10_p_val``) using double floating point arithmetic limits by `Eric Larson`_
- Fix channel name pick in :func:`mne.Evoked.get_peak` method by `Alex Gramfort`_
- Fix drop percentages to take into account ``ignore`` option in :func:`mne.viz.plot_drop_log` and :func:`mne.Epochs.plot_drop_log` by `Eric Larson`_.
- :class:`mne.EpochsArray` no longer has an average EEG reference silently added (but not applied to the data) by default. Use ``mne.EpochsArray.add_eeg_ref`` to properly add one.
- Fix :func:`mne.io.read_raw_ctf` to read ``n_samp_tot`` instead of ``n_samp`` by `Jaakko Leppakangas`_
API
~~~
- :func:`mne.io.read_raw_brainvision` now has ``event_id`` argument to assign non-standard trigger events to a trigger value by `Teon Brooks`_
- :func:`mne.read_epochs` now has ``add_eeg_ref=False`` by default, since average EEG reference can be added before writing or after reading using the method ``mne.Epochs.add_eeg_ref``.
- :class:`mne.EpochsArray` no longer has an average EEG reference silently added (but not applied to the data) by default. Use ``mne.EpochsArray.add_eeg_average_proj`` to properly add one.
Authors
~~~~~~~
The committer list for this release is the following (preceded by number of commits):
* 171 Eric Larson
* 117 Jaakko Leppakangas
* 58 Jona Sassenhagen
* 52 Mainak Jas
* 46 Alexandre Gramfort
* 33 Denis A. Engemann
* 28 Teon Brooks
* 24 Clemens Brunner
* 23 Christian Brodbeck
* 15 Mark Wronkiewicz
* 10 Jean-Remi King
* 5 Marijn van Vliet
* 3 Fede Raimondo
* 2 Alexander Rudiuk
* 2 emilyps14
* 2 lennyvarghese
* 1 Marian Dovgialo
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