1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131
|
"""MNE software for MEG and EEG data analysis."""
# PEP0440 compatible formatted version, see:
# https://www.python.org/dev/peps/pep-0440/
#
# Generic release markers:
# X.Y
# X.Y.Z # For bugfix releases
#
# Admissible pre-release markers:
# X.YaN # Alpha release
# X.YbN # Beta release
# X.YrcN # Release Candidate
# X.Y # Final release
#
# Dev branch marker is: 'X.Y.devN' where N is an integer.
#
from ._version import __version__
# have to import verbose first since it's needed by many things
from .utils import (set_log_level, set_log_file, verbose, set_config,
get_config, get_config_path, set_cache_dir,
set_memmap_min_size, grand_average, sys_info, open_docs,
use_log_level)
from .io.pick import (pick_types, pick_channels,
pick_channels_regexp, pick_channels_forward,
pick_types_forward, pick_channels_cov,
pick_channels_evoked, pick_info,
channel_type, channel_indices_by_type)
from .io.base import concatenate_raws
from .io.meas_info import create_info, Info
from .io.proj import Projection
from .io.kit import read_epochs_kit
from .io.eeglab import read_epochs_eeglab
from .io.reference import (set_eeg_reference, set_bipolar_reference,
add_reference_channels)
from .io.what import what
from .bem import (make_sphere_model, make_bem_model, make_bem_solution,
read_bem_surfaces, write_bem_surfaces, write_head_bem,
read_bem_solution, write_bem_solution)
from .cov import (read_cov, write_cov, Covariance, compute_raw_covariance,
compute_covariance, whiten_evoked, make_ad_hoc_cov)
from .event import (read_events, write_events, find_events, merge_events,
pick_events, make_fixed_length_events, concatenate_events,
find_stim_steps, AcqParserFIF)
from ._freesurfer import (head_to_mni, head_to_mri, read_talxfm,
get_volume_labels_from_aseg, read_freesurfer_lut,
vertex_to_mni, read_lta)
from .forward import (read_forward_solution, apply_forward, apply_forward_raw,
average_forward_solutions, Forward,
write_forward_solution, make_forward_solution,
convert_forward_solution, make_field_map,
make_forward_dipole, use_coil_def)
from .source_estimate import (read_source_estimate,
SourceEstimate, VectorSourceEstimate,
VolSourceEstimate, VolVectorSourceEstimate,
MixedSourceEstimate, MixedVectorSourceEstimate,
grade_to_tris,
spatial_src_adjacency,
spatial_tris_adjacency,
spatial_dist_adjacency,
spatial_inter_hemi_adjacency,
spatio_temporal_src_adjacency,
spatio_temporal_tris_adjacency,
spatio_temporal_dist_adjacency,
extract_label_time_course, stc_near_sensors)
from .surface import (read_surface, write_surface, decimate_surface, read_tri,
get_head_surf, get_meg_helmet_surf, dig_mri_distances,
warp_montage_volume, get_montage_volume_labels)
from .morph_map import read_morph_map
from .morph import (SourceMorph, read_source_morph, grade_to_vertices,
compute_source_morph)
from .source_space import (read_source_spaces,
write_source_spaces, setup_source_space,
setup_volume_source_space, SourceSpaces,
add_source_space_distances, morph_source_spaces,
get_volume_labels_from_src)
from .annotations import (Annotations, read_annotations, annotations_from_events,
events_from_annotations)
from .epochs import (BaseEpochs, Epochs, EpochsArray, read_epochs,
concatenate_epochs, make_fixed_length_epochs)
from .evoked import (Evoked, EvokedArray, read_evokeds, write_evokeds,
combine_evoked)
from .label import (read_label, label_sign_flip,
write_label, stc_to_label, grow_labels, Label, split_label,
BiHemiLabel, read_labels_from_annot, write_labels_to_annot,
random_parcellation, morph_labels, labels_to_stc)
from .misc import parse_config, read_reject_parameters
from .coreg import (create_default_subject, scale_bem, scale_mri, scale_labels,
scale_source_space)
from .transforms import (read_trans, write_trans,
transform_surface_to, Transform)
from .proj import (read_proj, write_proj, compute_proj_epochs,
compute_proj_evoked, compute_proj_raw, sensitivity_map)
from .dipole import read_dipole, Dipole, DipoleFixed, fit_dipole
from .channels import (equalize_channels, rename_channels, find_layout,
read_vectorview_selection)
from .report import Report, open_report
from .io import (read_epochs_fieldtrip, read_evoked_besa,
read_evoked_fieldtrip, read_evokeds_mff)
from .rank import compute_rank
from . import beamformer
from . import channels
from . import chpi
from . import commands
from . import coreg
from . import cuda
from . import datasets
from . import dipole
from . import epochs
from . import event
from . import io
from . import filter
from . import gui
from . import inverse_sparse
from . import minimum_norm
from . import preprocessing
from . import simulation
from . import stats
from . import surface
from . import time_frequency
from . import viz
from . import decoding
from . import export
# initialize logging
set_log_level(None, False)
set_log_file()
|