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|
#!/bin/bash
set -eo pipefail
if [ "${DEPS}" == "minimal" ]; then
return 0 2>/dev/null || exit "0"
fi;
pushd ~ > /dev/null
export MNE_ROOT="${PWD}/minimal_cmds"
export PATH=${MNE_ROOT}/bin:$PATH
if [ "${GITHUB_ACTIONS}" == "true" ]; then
echo "Setting MNE_ROOT for GHA"
echo "MNE_ROOT=${MNE_ROOT}" >> $GITHUB_ENV;
echo "${MNE_ROOT}/bin" >> $GITHUB_PATH;
elif [ "${AZURE_CI}" == "true" ]; then
echo "Setting MNE_ROOT for Azure"
echo "##vso[task.setvariable variable=MNE_ROOT]${MNE_ROOT}"
echo "##vso[task.setvariable variable=PATH]${PATH}";
elif [ "${CIRCLECI}" == "true" ]; then
echo "Setting MNE_ROOT for CircleCI"
echo "export MNE_ROOT=${MNE_ROOT}" >> "$BASH_ENV";
echo "export PATH=${MNE_ROOT}/bin:\$PATH" >> "$BASH_ENV";
fi;
if [[ "${CI_OS_NAME}" != "macos"* ]]; then
echo "Getting files for Linux..."
if [ ! -d "${PWD}/minimal_cmds" ]; then
curl -L https://osf.io/g7dzs/download?version=5 | tar xz
else
echo "Minimal commands already downloaded"
fi;
export LD_LIBRARY_PATH=${MNE_ROOT}/lib:$LD_LIBRARY_PATH
export NEUROMAG2FT_ROOT="${PWD}/minimal_cmds/bin"
export FREESURFER_HOME="${MNE_ROOT}"
if [ "${GITHUB_ACTIONS}" == "true" ]; then
echo "LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" >> "$GITHUB_ENV";
echo "NEUROMAG2FT_ROOT=${NEUROMAG2FT_ROOT}" >> "$GITHUB_ENV";
echo "FREESURFER_HOME=${FREESURFER_HOME}" >> "$GITHUB_ENV";
fi;
if [ "${AZURE_CI}" == "true" ]; then
echo "##vso[task.setvariable variable=LD_LIBRARY_PATH]${LD_LIBRARY_PATH}"
echo "##vso[task.setvariable variable=NEUROMAG2FT_ROOT]${NEUROMAG2FT_ROOT}"
echo "##vso[task.setvariable variable=FREESURFER_HOME]${FREESURFER_HOME}"
fi;
if [ "${CIRCLECI}" == "true" ]; then
echo "export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}" >> "$BASH_ENV";
echo "export NEUROMAG2FT_ROOT=${NEUROMAG2FT_ROOT}" >> "$BASH_ENV";
echo "export FREESURFER_HOME=${FREESURFER_HOME}" >> "$BASH_ENV";
fi;
else
echo "Getting files for macOS Intel..."
if [ ! -d "${PWD}/minimal_cmds" ]; then
curl -L https://osf.io/rjcz4/download?version=2 | tar xz
else
echo "Minimal commands already downloaded"
fi;
export DYLD_LIBRARY_PATH=${MNE_ROOT}/lib:$DYLD_LIBRARY_PATH
if [ "${GITHUB_ACTIONS}" == "true" ]; then
echo "Setting variables for GHA"
echo "DYLD_LIBRARY_PATH=${DYLD_LIBRARY_PATH}" >> "$GITHUB_ENV";
set -x
wget https://github.com/XQuartz/XQuartz/releases/download/XQuartz-2.7.11/XQuartz-2.7.11.dmg
sudo hdiutil attach XQuartz-2.7.11.dmg
sudo installer -package /Volumes/XQuartz-2.7.11/XQuartz.pkg -target /
sudo ln -s /opt/X11 /usr/X11
elif [ "${AZURE_CI}" == "true" ]; then
echo "Setting variables for Azure"
echo "##vso[task.setvariable variable=DYLD_LIBRARY_PATH]${DYLD_LIBRARY_PATH}"
elif [ "${CIRCLECI}" == "true" ]; then
echo "Setting variables for CircleCI"
echo "export DYLD_LIBRARY_PATH=${DYLD_LIBRARY_PATH}" >> "$BASH_ENV";
fi;
fi
popd > /dev/null
set -x
which mne_process_raw
mne_process_raw --version
which mne_surf2bem
mne_surf2bem --version
which mri_average
mri_average --version
set +x
|
