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# -*- coding: utf-8 -*-
"""
This module contains a MOArchiving4obj class for storing a set of non-dominated points in 4
objective space and calculating hypervolume with respect to the given reference point.
"""
from moarchiving.moarchiving_utils import hv4dplusR, remove_from_z
from moarchiving.moarchiving3obj import MOArchive3obj
from moarchiving.moarchiving_parent import MOArchiveParent
import warnings as _warnings
try:
import fractions
except ImportError:
_warnings.warn('`fractions` module not installed, arbitrary precision hypervolume computation not available')
inf = float('inf')
class MOArchive4obj(MOArchiveParent):
""" Class for storing a set of non-dominated points in 4 objective space and calculating
hypervolume with respect to the given reference point.
The archive is implemented as a doubly linked list, and can be modified using functions
add and remove. Points of the archive can be accessed as a list of points order by the fourth
coordinate using function points_list.
>>> from moarchiving.get_archive import get_mo_archive
>>> moa = get_mo_archive([[1, 2, 3, 4], [4, 3, 2, 1]])
>>> list(moa) # returns the list of points in the archive sorted by the third coordinate
[[4, 3, 2, 1], [1, 2, 3, 4]]
>>> moa.add([2, 2, 2, 2]) # add a new point to the archive
True
>>> moa.add([3, 3, 3, 3])
False
>>> get_mo_archive.hypervolume_final_float_type = fractions.Fraction
>>> moa = get_mo_archive([[1, 2, 3, 4], [2, 3, 4, 5], [4, 3, 2, 1]],
... reference_point=[5, 5, 5, 5], infos=["A", "B", "C"])
>>> moa.infos # returns the list of infos for each point in the archive
['C', 'A']
>>> moa.hypervolume
Fraction(44, 1)
>>> get_mo_archive.hypervolume_final_float_type = float
>>> get_mo_archive.hypervolume_computation_float_type = float
>>> moa2 = get_mo_archive([[1, 2, 3, 4], [2, 3, 4, 5], [4, 3, 2, 1]],
... reference_point=[5, 5, 5, 5])
>>> moa2.hypervolume
44.0
"""
try:
hypervolume_final_float_type = fractions.Fraction
hypervolume_computation_float_type = fractions.Fraction
except:
hypervolume_final_float_type = float
hypervolume_computation_float_type = float
def __init__(self, list_of_f_vals=None, reference_point=None, infos=None,
hypervolume_final_float_type=None,
hypervolume_computation_float_type=None):
""" Create a new 4 objective archive object.
f-vals beyond the `reference_point` are pruned away. The `reference_point` is also used
to compute the hypervolume.
infos are an optional list of additional information about the points in the archive.
"""
hypervolume_final_float_type = MOArchive4obj.hypervolume_final_float_type \
if hypervolume_final_float_type is None else hypervolume_final_float_type
hypervolume_computation_float_type = MOArchive4obj.hypervolume_computation_float_type \
if hypervolume_computation_float_type is None else hypervolume_computation_float_type
super().__init__(list_of_f_vals=list_of_f_vals,
reference_point=reference_point,
infos=infos,
n_obj=4,
hypervolume_final_float_type=hypervolume_final_float_type,
hypervolume_computation_float_type=hypervolume_computation_float_type)
self._hypervolume_already_computed = False
self.remove_dominated()
hv = self._set_HV()
self._length = len(list(self))
self._hypervolume_already_computed = True
if hv is not None and hv > 0:
self._hypervolume_plus = self._hypervolume
else:
if list_of_f_vals is None or len(list_of_f_vals) == 0:
self._hypervolume_plus = -inf
else:
self._hypervolume_plus = -min([self.distance_to_hypervolume_area(f)
for f in list_of_f_vals])
def add(self, f_vals, info=None, update_hypervolume=True):
""" Add a new point to the archive.
update_hypervolume should be set to True, unless adding multiple points at once,
in which case it is slightly more efficient to set it to True only for last point
>>> from moarchiving.get_archive import get_mo_archive
>>> moa = get_mo_archive(reference_point=[5, 5, 5, 5])
>>> moa.add([2, 3, 4, 5])
False
>>> moa.add([1, 2, 3, 4])
True
>>> list(moa)
[[1, 2, 3, 4]]
>>> moa.add([4, 3, 2, 1])
True
>>> list(moa)
[[4, 3, 2, 1], [1, 2, 3, 4]]
>>> moa.add([2, 2, 2, 2])
True
>>> list(moa)
[[4, 3, 2, 1], [2, 2, 2, 2], [1, 2, 3, 4]]
"""
if len(f_vals) != self.n_obj:
raise ValueError(f"argument `f_pair` must be of length {self.n_obj}, was ``{f_vals}``")
if self.dominates(f_vals):
return False
if not self.in_domain(f_vals):
dist_to_hv_area = self.distance_to_hypervolume_area(f_vals)
if -dist_to_hv_area > self._hypervolume_plus:
self._hypervolume_plus = -dist_to_hv_area
return False
self.__init__(list(self) + [f_vals], self.reference_point, self.infos + [info])
return True
def remove(self, f_vals):
""" Remove a point from the archive.
Returns False if the point is not in the archive and it's Info if the point is removed
>>> from moarchiving.get_archive import get_mo_archive
>>> moa = get_mo_archive([[1, 2, 3, 4], [2, 2, 2, 2], [4, 3, 2, 1]],
... reference_point=[5, 5, 5, 5], infos=["A", "B", "C"])
>>> moa.remove([2, 2, 2, 2])
'B'
>>> list(moa)
[[4, 3, 2, 1], [1, 2, 3, 4]]
>>> moa.remove([1, 2, 3, 4])
'A'
>>> list(moa)
[[4, 3, 2, 1]]
"""
points_list = list(self)
if f_vals not in points_list:
return False
point_idx = points_list.index(f_vals)
point_info = self.infos[point_idx]
self.__init__([p for p in points_list if p != f_vals], self.reference_point,
[info for p, info in zip(points_list, self.infos) if p != f_vals])
return point_info
def add_list(self, list_of_f_vals, infos=None):
""" Add a list of points to the archive.
>>> from moarchiving.get_archive import get_mo_archive
>>> moa = get_mo_archive(reference_point=[5, 5, 5, 5])
>>> moa.add_list([[1, 2, 4, 4], [1, 2, 3, 4]], infos=["A", "B"])
>>> list(moa), moa.infos
([[1, 2, 3, 4]], ['B'])
>>> moa.add_list([[4, 3, 2, 1], [2, 2, 2, 2], [3, 3, 3, 3]], infos=["C", "D", "E"])
>>> list(moa), moa.infos
([[4, 3, 2, 1], [2, 2, 2, 2], [1, 2, 3, 4]], ['C', 'D', 'B'])
>>> moa.add_list([[1, 1, 1, 1]])
>>> list(moa), moa.infos
([[1, 1, 1, 1]], [None])
"""
if infos is None:
infos = [None] * len(list_of_f_vals)
self.__init__(list(self) + list_of_f_vals, self.reference_point, self.infos + infos)
def copy(self):
""" Return a copy of the archive.
>>> from moarchiving.get_archive import get_mo_archive
>>> moa = get_mo_archive([[1, 2, 3, 4], [2, 2, 2, 2], [4, 3, 2, 1]],
... reference_point=[5, 5, 5, 5], infos=["A", "B", "C"])
>>> moa2 = moa.copy()
>>> list(moa2), moa2.infos
([[4, 3, 2, 1], [2, 2, 2, 2], [1, 2, 3, 4]], ['C', 'B', 'A'])
>>> moa.remove([2, 2, 2, 2])
'B'
>>> moa2.add([0, 1, 3, 1.5], "D")
True
>>> list(moa2), moa2.infos
([[4, 3, 2, 1], [0, 1, 3, 1.5], [2, 2, 2, 2]], ['C', 'D', 'B'])
>>> list(moa), moa.infos
([[4, 3, 2, 1], [1, 2, 3, 4]], ['C', 'A'])
"""
return MOArchive4obj(list(self), self.reference_point, self.infos)
def _get_kink_points(self):
""" Function that returns the kink points of the archive.
Kink point are calculated by making a sweep of the archive, where the state is one
3 objective archive of all possible kink points found so far, and another 3 objective
archive which stores the non-dominated points so far in the sweep
>>> from moarchiving.get_archive import get_mo_archive
>>> moa = get_mo_archive([[1, 2, 3, 4], [4, 3, 2, 1]], reference_point=[5, 5, 5, 5])
>>> moa._get_kink_points()
[[5, 5, 5, 1], [5, 3, 5, 4], [4, 5, 5, 4], [5, 5, 2, 5], [5, 3, 3, 5], [4, 5, 3, 5], [5, 2, 5, 5], [1, 5, 5, 5]]
"""
if self.reference_point is None:
max_point = max([max([point[i] for point in self]) for i in range(3)]) + 1
ref_point = [max_point] * self.n_obj
else:
ref_point = self.reference_point
# initialize the two states, one for points and another for kink points
points_state = MOArchive3obj(reference_point=ref_point[:3])
kink_candidates = MOArchive3obj([ref_point[:3]],
reference_point=[r + 1 for r in ref_point[:3]])
# initialize the point dictionary, which will store the fourth coordinate of the points
point_dict = {
tuple(ref_point[:3]): -inf
}
kink_points = []
for point in self:
# add the point to the kink state to get the dominated kink points, then take it out
if kink_candidates.add(point[:3]):
removed = kink_candidates._removed.copy()
for removed_point in removed:
w = point_dict[tuple(removed_point)]
if w < point[3]:
kink_points.append([removed_point[0], removed_point[1], removed_point[2],
point[3]])
kink_candidates._removed.clear()
kink_candidates.remove(point[:3])
# add the point to the point state, and get two new kink point candidates
points_state.add(point[:3])
new_kink_candidates = points_state._get_kink_points()
new_kink_candidates = [p for p in new_kink_candidates if
(p[0] == point[0] or p[1] == point[1] or p[2] == point[2])]
for p in new_kink_candidates:
point_dict[tuple(p)] = point[3]
kink_candidates.add(p)
for point in kink_candidates:
kink_points.append([point[0], point[1], point[2], ref_point[3]])
return kink_points
def hypervolume_improvement(self, f_vals):
""" Returns the hypervolume improvement of adding a point to the archive
>>> from moarchiving.get_archive import get_mo_archive
>>> moa = get_mo_archive([[1, 2, 3, 4], [4, 3, 2, 1]], reference_point=[5, 5, 5, 5])
>>> moa.hypervolume_improvement([2, 2, 2, 2])
49.0
>>> moa.hypervolume_improvement([3, 3, 4, 5])
-1.0
"""
if f_vals in list(self):
return 0
if self.dominates(f_vals):
return -1 * self.distance_to_pareto_front(f_vals)
moa_copy = self.copy()
moa_copy.add(f_vals)
return self.hypervolume_final_float_type(moa_copy.hypervolume - self.hypervolume)
def compute_hypervolume(self, reference_point=None):
""" Compute the hypervolume of the archive.
>>> from moarchiving.get_archive import get_mo_archive
>>> moa = get_mo_archive([[1, 2, 3, 4], [4, 3, 2, 1]], reference_point=[5, 5, 5, 5])
>>> moa.compute_hypervolume()
44.0
"""
if reference_point is not None:
_warnings.warn("Reference point given at the initialization is used "
"in 3 objective hypervolume computation")
if self._hypervolume_already_computed:
return self._hypervolume
return self.hypervolume_final_float_type(
hv4dplusR(self.head, self.hypervolume_computation_float_type))
def remove_dominated(self):
""" Preprocessing step to remove dominated points. """
di = self.n_obj - 1
current = self.head.next[di]
stop = self.head.prev[di]
non_dominated_points = []
dominated_points = []
while current != stop:
dominated = False
for node in non_dominated_points:
if node != current and all(node.x[i] <= current.x[i] for i in range(3)) and any(
node.x[i] < current.x[i] for i in range(3)):
dominated = True
break
if dominated:
dominated_points.append(current)
else:
non_dominated_points.append(current)
current = current.next[di]
for point in dominated_points:
remove_from_z(point, archive_dim=self.n_obj)
if __name__ == "__main__":
import doctest
print('doctest.testmod() in moarchiving4obj.py')
print(doctest.testmod())
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