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FROM jupyter/minimal-notebook:latest
LABEL maintainer="Martin Fleischmann <martin@martinfleischmann.net>"
ENV LANG=C.UTF-8 LC_ALL=C.UTF-8
RUN conda install mamba \
&& conda config --add channels conda-forge \
&& conda config --set channel_priority strict \
&& mamba install --yes --quiet \
'geopandas' \
'momepy' \
'seaborn' \
'scikit-learn' \
'contextily' \
'legendgram' \
'pysal' \
'osmnx' \
'scipy' \
'clustergram' \
'dask' \
&& conda clean --all --yes --force-pkgs-dirs \
&& find /opt/conda/ -follow -type f -name '*.a' -delete \
&& find /opt/conda/ -follow -type f -name '*.pyc' -delete \
&& find /opt/conda/ -follow -type f -name '*.js.map' -delete
#--- Jupyter config ---#
USER root
RUN echo "c.NotebookApp.default_url = '/lab'"\
>> /home/$NB_USER/.jupyter/jupyter_notebook_config.py \
&& jupyter lab build -y \
# Clean cache up
&& jupyter lab clean -y \
&& conda clean --all -f -y \
&& npm cache clean --force \
&& rm -rf $CONDA_DIR/share/jupyter/lab/staging \
&& rm -rf "/home/${NB_USER}/.node-gyp" \
&& rm -rf /home/$NB_USER/.cache/yarn \
# Fix permissions
&& fix-permissions "${CONDA_DIR}" \
&& fix-permissions "/home/${NB_USER}" \
# Build mpl font cache
&& python -c "import matplotlib.pyplot;"
USER $NB_UID
#--- htop ---#
USER root
RUN apt-get update \
&& apt-get install -y --no-install-recommends htop \
&& apt-get clean \
&& rm -rf /var/lib/apt/lists/*
# Switch back to user to avoid accidental container runs as root
USER $NB_UID
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