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#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
pymzML comes with the queryOBO.py script that can be used to interogate the OBO
file.
Usage:
::
$ ./example_scripts/queryOBO.py "scan time"
MS:1000016
scan time
"The time taken for an acquisition by scanning analyzers." [PSI:MS]
Is a: MS:1000503 ! scan attribute
$
"""
from __future__ import print_function
import pymzml.obo
import sys
if __name__ == '__main__':
if len(sys.argv) == 1:
print(__doc__)
exit(1)
obo = pymzml.obo.oboTranslator()
arg = sys.argv[1]
if arg.isdigit():
print(obo['MS:{0}'.format(arg)])
else:
n = 0
for lookup in obo.lookups:
for key in lookup.keys():
if arg in key:
print("#{0}".format(n))
print(lookup[key]['id'])
print(lookup[key]['name'])
print(lookup[key]['def'])
if 'is_a' in lookup[key].keys():
print("Is a:",lookup[key]['is_a'])
n += 1
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