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#!/bin/bash
set -e
pkg=python3-nanoget
export LC_ALL=C.UTF-8
if [ "${AUTOPKGTEST_TMP}" = "" ] ; then
AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
trap "rm -rf ${AUTOPKGTEST_TMP}" 0 INT QUIT ABRT PIPE TERM
fi
cp -a /usr/share/doc/${pkg}/examples/* "${AUTOPKGTEST_TMP}"
cd "${AUTOPKGTEST_TMP}"
gunzip nanotest/[as]*.gz
gunzip nanotest/reads-mixed-timestamp.fastq.gz
python3 test.py
if diff nanotest/alignment.bam.bai_orig nanotest/alignment.bam.bai ; then
echo "Pass"
else
echo "Fail"
exit 1
fi
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