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import nanoget
def run_tests():
"""Test functions using testdata from the nanotest repo."""
nanoget.get_input("bam", ["nanotest/alignment.bam"])
nanoget.get_input("bam", ["nanotest/alignment.bam"], keep_supp=False)
nanoget.get_input("fastq_rich", ["nanotest/reads.fastq.gz"])
nanoget.get_input("fastq_rich", ["nanotest/reads-mixed-timestamp.fastq"])
nanoget.get_input("summary", ["nanotest/sequencing_summary.txt"], combine="track")
nanoget.get_input("fastq_minimal", ["nanotest/reads.fastq.gz"])
nanoget.get_input("fastq", ["nanotest/reads.fastq.gz"])
nanoget.get_input("fasta", ["nanotest/reads.fa.gz"])
if __name__ == "__main__":
run_tests()
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