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Source: python-nanomath
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Nilesh Patra <nilesh@debian.org>
Build-Depends: debhelper-compat (= 13),
dh-python,
python3,
python3-setuptools,
python3-deprecated,
python3-numpy <!nocheck>,
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/python-nanomath
Vcs-Git: https://salsa.debian.org/med-team/python-nanomath.git
Homepage: https://github.com/wdecoster/nanomath
Rules-Requires-Root: no
Package: python3-nanomath
Architecture: all
Section: python
Depends: ${python3:Depends},
${misc:Depends},
python3-pandas,
python3-deprecated,
python3-numpy
Description: simple math function for other Oxford Nanopore processing scripts
This Python3 module provides a few simple math and statistics functions for
other scripts processing Oxford Nanopore sequencing data.
.
* Calculate read N50 from a set of lengths get_N50(readlenghts)
* Remove extreme length outliers from a dataset
remove_length_outliers(dataframe, columname)
* Calculate the average Phred quality of a read ave_qual(qualscores)
* Write out the statistics report after calling readstats function
write_stats(dataframe, outputname)
* Compute a number of statistics, return a dictionary
calc_read_stats(dataframe)
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