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Source: python-ncls
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>, Nilesh Patra <npatra974@gmail.com>
Section: science
Testsuite: autopkgtest-pkg-python
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-python,
cython3,
python3-all-dev,
python3-setuptools,
python3-numpy <!nocheck>,
python3-pytest <!nocheck>
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/python-ncls
Vcs-Git: https://salsa.debian.org/med-team/python-ncls.git
Homepage: https://github.com/biocore-ntnu/ncls
Rules-Requires-Root: no
Package: python3-ncls
Architecture: any
Section: python
Depends: ${shlibs:Depends},
${python3:Depends},
${misc:Depends}
Description: datastructure for interval overlap queries
The Nested Containment List is a datastructure for interval overlap
queries, like the interval tree. It is usually an order of magnitude
faster than the interval tree both for building and query lookups.
.
The implementation here is a revived version of the one used in the
now defunct PyGr library, which died of bitrot. It was now made less
memory-consuming and wrapper functions allow batch-querying
the NCLS for further speed gains.
.
This package was implemented to be the cornerstone of the PyRanges project,
but was made available to the Python community as a stand-alone library.
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