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from numpy.testing import *
from StringIO import StringIO
import pickle
import sys
from os import path
set_local_path()
import numpy as np
restore_path()
rlevel = 1
def assert_valid_refcount(op):
a = np.arange(100 * 100)
b = np.arange(100*100).reshape(100, 100)
c = b
i = 1
rc = sys.getrefcount(i)
for j in range(15):
d = op(b,c)
assert(sys.getrefcount(i) >= rc)
class TestRegression(NumpyTestCase):
def check_invalid_round(self,level=rlevel):
"""Ticket #3"""
v = 4.7599999999999998
assert_array_equal(np.array([v]),np.array(v))
def check_mem_empty(self,level=rlevel):
"""Ticket #7"""
np.empty((1,),dtype=[('x',np.int64)])
def check_pickle_transposed(self,level=rlevel):
"""Ticket #16"""
a = np.transpose(np.array([[2,9],[7,0],[3,8]]))
f = StringIO()
pickle.dump(a,f)
f.seek(0)
b = pickle.load(f)
f.close()
assert_array_equal(a,b)
def check_masked_array_create(self,level=rlevel):
"""Ticket #17"""
x = np.ma.masked_array([0,1,2,3,0,4,5,6],mask=[0,0,0,1,1,1,0,0])
assert_array_equal(np.ma.nonzero(x),[[1,2,6,7]])
def check_poly1d(self,level=rlevel):
"""Ticket #28"""
assert_equal(np.poly1d([1]) - np.poly1d([1,0]),
np.poly1d([-1,1]))
def check_typeNA(self,level=rlevel):
"""Ticket #31"""
assert_equal(np.typeNA[np.int64],'Int64')
assert_equal(np.typeNA[np.uint64],'UInt64')
def check_dtype_names(self,level=rlevel):
"""Ticket #35"""
dt = np.dtype([(('name','label'),np.int32,3)])
def check_reduce(self,level=rlevel):
"""Ticket #40"""
assert_almost_equal(np.add.reduce([1.,.5],dtype=None), 1.5)
def check_zeros_order(self,level=rlevel):
"""Ticket #43"""
np.zeros([3], int, 'C')
np.zeros([3], order='C')
np.zeros([3], int, order='C')
def check_sort_bigendian(self,level=rlevel):
"""Ticket #47"""
a = np.linspace(0, 10, 11)
c = a.astype(np.dtype('<f8'))
c.sort()
assert_array_almost_equal(c, a)
def check_negative_nd_indexing(self,level=rlevel):
"""Ticket #49"""
c = np.arange(125).reshape((5,5,5))
origidx = np.array([-1, 0, 1])
idx = np.array(origidx)
c[idx]
assert_array_equal(idx, origidx)
def check_char_dump(self,level=rlevel):
"""Ticket #50"""
import tempfile
f = StringIO()
ca = np.char.array(np.arange(1000,1010),itemsize=4)
ca.dump(f)
f.seek(0)
ca = np.load(f)
f.close()
def check_noncontiguous_fill(self,level=rlevel):
"""Ticket #58."""
a = np.zeros((5,3))
b = a[:,:2,]
def rs():
b.shape = (10,)
self.failUnlessRaises(AttributeError,rs)
def check_bool(self,level=rlevel):
"""Ticket #60"""
x = np.bool_(1)
def check_masked_array(self,level=rlevel):
"""Ticket #61"""
x = np.ma.array(1,mask=[1])
def check_mem_masked_where(self,level=rlevel):
"""Ticket #62"""
from numpy.ma import masked_where, MaskType
a = np.zeros((1,1))
b = np.zeros(a.shape, MaskType)
c = masked_where(b,a)
a-c
def check_indexing1(self,level=rlevel):
"""Ticket #64"""
descr = [('x', [('y', [('z', 'c16', (2,)),]),]),]
buffer = ((([6j,4j],),),)
h = np.array(buffer, dtype=descr)
h['x']['y']['z']
def check_indexing2(self,level=rlevel):
"""Ticket #65"""
descr = [('x', 'i4', (2,))]
buffer = ([3,2],)
h = np.array(buffer, dtype=descr)
h['x']
def check_round(self,level=rlevel):
"""Ticket #67"""
x = np.array([1+2j])
assert_almost_equal(x**(-1), [1/(1+2j)])
def check_kron_matrix(self,level=rlevel):
"""Ticket #71"""
x = np.matrix('[1 0; 1 0]')
assert_equal(type(np.kron(x,x)),type(x))
def check_scalar_compare(self,level=rlevel):
"""Ticket #72"""
a = np.array(['test', 'auto'])
assert_array_equal(a == 'auto', np.array([False,True]))
self.assert_(a[1] == 'auto')
self.assert_(a[0] != 'auto')
b = np.linspace(0, 10, 11)
self.assert_(b != 'auto')
self.assert_(b[0] != 'auto')
def check_unicode_swapping(self,level=rlevel):
"""Ticket #79"""
ulen = 1
ucs_value = u'\U0010FFFF'
ua = np.array([[[ucs_value*ulen]*2]*3]*4, dtype='U%s' % ulen)
ua2 = ua.newbyteorder()
def check_matrix_std_argmax(self,level=rlevel):
"""Ticket #83"""
x = np.asmatrix(np.random.uniform(0,1,(3,3)))
self.assertEqual(x.std().shape, ())
self.assertEqual(x.argmax().shape, ())
def check_object_array_fill(self,level=rlevel):
"""Ticket #86"""
x = np.zeros(1, 'O')
x.fill([])
def check_cov_parameters(self,level=rlevel):
"""Ticket #91"""
x = np.random.random((3,3))
y = x.copy()
np.cov(x,rowvar=1)
np.cov(y,rowvar=0)
assert_array_equal(x,y)
def check_mem_dtype_align(self,level=rlevel):
"""Ticket #93"""
self.failUnlessRaises(TypeError,np.dtype,
{'names':['a'],'formats':['foo']},align=1)
def check_mem_digitize(self,level=rlevel):
"""Ticket #95"""
for i in range(100):
np.digitize([1,2,3,4],[1,3])
np.digitize([0,1,2,3,4],[1,3])
def check_intp(self,level=rlevel):
"""Ticket #99"""
i_width = np.int_(0).nbytes*2 - 1
long('0x' + 'f'*i_width,16)
#self.failUnlessRaises(OverflowError,np.intp,'0x' + 'f'*(i_width+1),16)
#self.failUnlessRaises(ValueError,np.intp,'0x1',32)
assert_equal(255,np.long('0xFF',16))
assert_equal(1024,np.long(1024))
def check_endian_bool_indexing(self,level=rlevel):
"""Ticket #105"""
a = np.arange(10.,dtype='>f8')
b = np.arange(10.,dtype='<f8')
xa = np.where((a>2) & (a<6))
xb = np.where((b>2) & (b<6))
ya = ((a>2) & (a<6))
yb = ((b>2) & (b<6))
assert_array_almost_equal(xa,ya.nonzero())
assert_array_almost_equal(xb,yb.nonzero())
assert(np.all(a[ya] > 0.5))
assert(np.all(b[yb] > 0.5))
def check_mem_dot(self,level=rlevel):
"""Ticket #106"""
x = np.random.randn(0,1)
y = np.random.randn(10,1)
z = np.dot(x, np.transpose(y))
def check_arange_endian(self,level=rlevel):
"""Ticket #111"""
ref = np.arange(10)
x = np.arange(10,dtype='<f8')
assert_array_equal(ref,x)
x = np.arange(10,dtype='>f8')
assert_array_equal(ref,x)
# Longfloat support is not consistent enough across
# platforms for this test to be meaningful.
# def check_longfloat_repr(self,level=rlevel):
# """Ticket #112"""
# if np.longfloat(0).itemsize > 8:
# a = np.exp(np.array([1000],dtype=np.longfloat))
# assert(str(a)[1:9] == str(a[0])[:8])
def check_argmax(self,level=rlevel):
"""Ticket #119"""
a = np.random.normal(0,1,(4,5,6,7,8))
for i in xrange(a.ndim):
aargmax = a.argmax(i)
def check_matrix_properties(self,level=rlevel):
"""Ticket #125"""
a = np.matrix([1.0],dtype=float)
assert(type(a.real) is np.matrix)
assert(type(a.imag) is np.matrix)
c,d = np.matrix([0.0]).nonzero()
assert(type(c) is np.matrix)
assert(type(d) is np.matrix)
def check_mem_divmod(self,level=rlevel):
"""Ticket #126"""
for i in range(10):
divmod(np.array([i])[0],10)
def check_hstack_invalid_dims(self,level=rlevel):
"""Ticket #128"""
x = np.arange(9).reshape((3,3))
y = np.array([0,0,0])
self.failUnlessRaises(ValueError,np.hstack,(x,y))
def check_squeeze_type(self,level=rlevel):
"""Ticket #133"""
a = np.array([3])
b = np.array(3)
assert(type(a.squeeze()) is np.ndarray)
assert(type(b.squeeze()) is np.ndarray)
def check_add_identity(self,level=rlevel):
"""Ticket #143"""
assert_equal(0,np.add.identity)
def check_binary_repr_0(self,level=rlevel):
"""Ticket #151"""
assert_equal('0',np.binary_repr(0))
def check_rec_iterate(self,level=rlevel):
"""Ticket #160"""
descr = np.dtype([('i',int),('f',float),('s','|S3')])
x = np.rec.array([(1,1.1,'1.0'),
(2,2.2,'2.0')],dtype=descr)
x[0].tolist()
[i for i in x[0]]
def check_unicode_string_comparison(self,level=rlevel):
"""Ticket #190"""
a = np.array('hello',np.unicode_)
b = np.array('world')
a == b
def check_tostring_FORTRANORDER_discontiguous(self,level=rlevel):
"""Fix in r2836"""
# Create discontiguous Fortran-ordered array
x = np.array(np.random.rand(3,3),order='F')[:,:2]
assert_array_almost_equal(x.ravel(),np.fromstring(x.tostring()))
def check_flat_assignment(self,level=rlevel):
"""Correct behaviour of ticket #194"""
x = np.empty((3,1))
x.flat = np.arange(3)
assert_array_almost_equal(x,[[0],[1],[2]])
x.flat = np.arange(3,dtype=float)
assert_array_almost_equal(x,[[0],[1],[2]])
def check_broadcast_flat_assignment(self,level=rlevel):
"""Ticket #194"""
x = np.empty((3,1))
def bfa(): x[:] = np.arange(3)
def bfb(): x[:] = np.arange(3,dtype=float)
self.failUnlessRaises(ValueError, bfa)
self.failUnlessRaises(ValueError, bfb)
def check_unpickle_dtype_with_object(self,level=rlevel):
"""Implemented in r2840"""
dt = np.dtype([('x',int),('y',np.object_),('z','O')])
f = StringIO()
pickle.dump(dt,f)
f.seek(0)
dt_ = pickle.load(f)
f.close()
assert_equal(dt,dt_)
def check_mem_array_creation_invalid_specification(self,level=rlevel):
"""Ticket #196"""
dt = np.dtype([('x',int),('y',np.object_)])
# Wrong way
self.failUnlessRaises(ValueError, np.array, [1,'object'], dt)
# Correct way
np.array([(1,'object')],dt)
def check_recarray_single_element(self,level=rlevel):
"""Ticket #202"""
a = np.array([1,2,3],dtype=np.int32)
b = a.copy()
r = np.rec.array(a,shape=1,formats=['3i4'],names=['d'])
assert_array_equal(a,b)
assert_equal(a,r[0][0])
def check_zero_sized_array_indexing(self,level=rlevel):
"""Ticket #205"""
tmp = np.array([])
def index_tmp(): tmp[np.array(10)]
self.failUnlessRaises(IndexError, index_tmp)
def check_unique_zero_sized(self,level=rlevel):
"""Ticket #205"""
assert_array_equal([], np.unique(np.array([])))
def check_chararray_rstrip(self,level=rlevel):
"""Ticket #222"""
x = np.chararray((1,),5)
x[0] = 'a '
x = x.rstrip()
assert_equal(x[0], 'a')
def check_object_array_shape(self,level=rlevel):
"""Ticket #239"""
assert_equal(np.array([[1,2],3,4],dtype=object).shape, (3,))
assert_equal(np.array([[1,2],[3,4]],dtype=object).shape, (2,2))
assert_equal(np.array([(1,2),(3,4)],dtype=object).shape, (2,2))
assert_equal(np.array([],dtype=object).shape, (0,))
assert_equal(np.array([[],[],[]],dtype=object).shape, (3,0))
assert_equal(np.array([[3,4],[5,6],None],dtype=object).shape, (3,))
def check_mem_around(self,level=rlevel):
"""Ticket #243"""
x = np.zeros((1,))
y = [0]
decimal = 6
np.around(abs(x-y),decimal) <= 10.0**(-decimal)
def check_character_array_strip(self,level=rlevel):
"""Ticket #246"""
x = np.char.array(("x","x ","x "))
for c in x: assert_equal(c,"x")
def check_lexsort(self,level=rlevel):
"""Lexsort memory error"""
v = np.array([1,2,3,4,5,6,7,8,9,10])
assert_equal(np.lexsort(v),0)
def check_pickle_dtype(self,level=rlevel):
"""Ticket #251"""
import pickle
pickle.dumps(np.float)
def check_masked_array_multiply(self,level=rlevel):
"""Ticket #254"""
a = np.ma.zeros((4,1))
a[2,0] = np.ma.masked
b = np.zeros((4,2))
a*b
b*a
def check_swap_real(self, level=rlevel):
"""Ticket #265"""
assert_equal(np.arange(4,dtype='>c8').imag.max(),0.0)
assert_equal(np.arange(4,dtype='<c8').imag.max(),0.0)
assert_equal(np.arange(4,dtype='>c8').real.max(),3.0)
assert_equal(np.arange(4,dtype='<c8').real.max(),3.0)
def check_object_array_from_list(self, level=rlevel):
"""Ticket #270"""
a = np.array([1,'A',None])
def check_masked_array_repeat(self, level=rlevel):
"""Ticket #271"""
np.ma.array([1],mask=False).repeat(10)
def check_multiple_assign(self, level=rlevel):
"""Ticket #273"""
a = np.zeros((3,1),int)
a[[1,2]] = 1
def check_empty_array_type(self, level=rlevel):
assert_equal(np.array([]).dtype, np.zeros(0).dtype)
def check_void_coercion(self, level=rlevel):
dt = np.dtype([('a','f4'),('b','i4')])
x = np.zeros((1,),dt)
assert(np.r_[x,x].dtype == dt)
def check_void_copyswap(self, level=rlevel):
dt = np.dtype([('one', '<i4'),('two', '<i4')])
x = np.array((1,2), dtype=dt)
x = x.byteswap()
assert(x['one'] > 1 and x['two'] > 2)
def check_method_args(self, level=rlevel):
# Make sure methods and functions have same default axis
# keyword and arguments
funcs1= ['argmax', 'argmin', 'sum', ('product', 'prod'),
('sometrue', 'any'),
('alltrue', 'all'), 'cumsum', ('cumproduct', 'cumprod'),
'ptp', 'cumprod', 'prod', 'std', 'var', 'mean',
'round', 'min', 'max', 'argsort', 'sort']
funcs2 = ['compress', 'take', 'repeat']
for func in funcs1:
arr = np.random.rand(8,7)
arr2 = arr.copy()
if isinstance(func, tuple):
func_meth = func[1]
func = func[0]
else:
func_meth = func
res1 = getattr(arr, func_meth)()
res2 = getattr(np, func)(arr2)
if res1 is None:
assert abs(arr-res2).max() < 1e-8, func
else:
assert abs(res1-res2).max() < 1e-8, func
for func in funcs2:
arr1 = np.random.rand(8,7)
arr2 = np.random.rand(8,7)
res1 = None
if func == 'compress':
arr1 = arr1.ravel()
res1 = getattr(arr2, func)(arr1)
else:
arr2 = (15*arr2).astype(int).ravel()
if res1 is None:
res1 = getattr(arr1, func)(arr2)
res2 = getattr(np, func)(arr1, arr2)
assert abs(res1-res2).max() < 1e-8, func
def check_mem_lexsort_strings(self, level=rlevel):
"""Ticket #298"""
lst = ['abc','cde','fgh']
np.lexsort((lst,))
def check_fancy_index(self, level=rlevel):
"""Ticket #302"""
x = np.array([1,2])[np.array([0])]
assert_equal(x.shape,(1,))
def check_recarray_copy(self, level=rlevel):
"""Ticket #312"""
dt = [('x',np.int16),('y',np.float64)]
ra = np.array([(1,2.3)], dtype=dt)
rb = np.rec.array(ra, dtype=dt)
rb['x'] = 2.
assert ra['x'] != rb['x']
def check_rec_fromarray(self, level=rlevel):
"""Ticket #322"""
x1 = np.array([[1,2],[3,4],[5,6]])
x2 = np.array(['a','dd','xyz'])
x3 = np.array([1.1,2,3])
np.rec.fromarrays([x1,x2,x3], formats="(2,)i4,a3,f8")
def check_object_array_assign(self, level=rlevel):
x = np.empty((2,2),object)
x.flat[2] = (1,2,3)
assert_equal(x.flat[2],(1,2,3))
def check_ndmin_float64(self, level=rlevel):
"""Ticket #324"""
x = np.array([1,2,3],dtype=np.float64)
assert_equal(np.array(x,dtype=np.float32,ndmin=2).ndim,2)
assert_equal(np.array(x,dtype=np.float64,ndmin=2).ndim,2)
def check_mem_vectorise(self, level=rlevel):
"""Ticket #325"""
vt = np.vectorize(lambda *args: args)
vt(np.zeros((1,2,1)), np.zeros((2,1,1)), np.zeros((1,1,2)))
vt(np.zeros((1,2,1)), np.zeros((2,1,1)), np.zeros((1,1,2)), np.zeros((2,2)))
def check_mem_axis_minimization(self, level=rlevel):
"""Ticket #327"""
data = np.arange(5)
data = np.add.outer(data,data)
def check_mem_float_imag(self, level=rlevel):
"""Ticket #330"""
np.float64(1.0).imag
def check_dtype_tuple(self, level=rlevel):
"""Ticket #334"""
assert np.dtype('i4') == np.dtype(('i4',()))
def check_dtype_posttuple(self, level=rlevel):
"""Ticket #335"""
np.dtype([('col1', '()i4')])
def check_mgrid_single_element(self, level=rlevel):
"""Ticket #339"""
assert_array_equal(np.mgrid[0:0:1j],[0])
assert_array_equal(np.mgrid[0:0],[])
def check_numeric_carray_compare(self, level=rlevel):
"""Ticket #341"""
assert_equal(np.array([ 'X' ], 'c'),'X')
def check_string_array_size(self, level=rlevel):
"""Ticket #342"""
self.failUnlessRaises(ValueError,
np.array,[['X'],['X','X','X']],'|S1')
def check_dtype_repr(self, level=rlevel):
"""Ticket #344"""
dt1=np.dtype(('uint32', 2))
dt2=np.dtype(('uint32', (2,)))
assert_equal(dt1.__repr__(), dt2.__repr__())
def check_reshape_order(self, level=rlevel):
"""Make sure reshape order works."""
a = np.arange(6).reshape(2,3,order='F')
assert_equal(a,[[0,2,4],[1,3,5]])
a = np.array([[1,2],[3,4],[5,6],[7,8]])
b = a[:,1]
assert_equal(b.reshape(2,2,order='F'), [[2,6],[4,8]])
def check_repeat_discont(self, level=rlevel):
"""Ticket #352"""
a = np.arange(12).reshape(4,3)[:,2]
assert_equal(a.repeat(3), [2,2,2,5,5,5,8,8,8,11,11,11])
def check_array_index(self, level=rlevel):
"""Make sure optimization is not called in this case."""
a = np.array([1,2,3])
a2 = np.array([[1,2,3]])
assert_equal(a[np.where(a==3)], a2[np.where(a2==3)])
def check_object_argmax(self, level=rlevel):
a = np.array([1,2,3],dtype=object)
assert a.argmax() == 2
def check_recarray_fields(self, level=rlevel):
"""Ticket #372"""
dt0 = np.dtype([('f0','i4'),('f1','i4')])
dt1 = np.dtype([('f0','i8'),('f1','i8')])
for a in [np.array([(1,2),(3,4)],"i4,i4"),
np.rec.array([(1,2),(3,4)],"i4,i4"),
np.rec.array([(1,2),(3,4)]),
np.rec.fromarrays([(1,2),(3,4)],"i4,i4"),
np.rec.fromarrays([(1,2),(3,4)])]:
assert(a.dtype in [dt0,dt1])
def check_random_shuffle(self, level=rlevel):
"""Ticket #374"""
a = np.arange(5).reshape((5,1))
b = a.copy()
np.random.shuffle(b)
assert_equal(np.sort(b, axis=0),a)
def check_refcount_vectorize(self, level=rlevel):
"""Ticket #378"""
def p(x,y): return 123
v = np.vectorize(p)
assert_valid_refcount(v)
def check_poly1d_nan_roots(self, level=rlevel):
"""Ticket #396"""
p = np.poly1d([np.nan,np.nan,1], r=0)
self.failUnlessRaises(np.linalg.LinAlgError,getattr,p,"r")
def check_refcount_vdot(self, level=rlevel):
"""Changeset #3443"""
assert_valid_refcount(np.vdot)
def check_startswith(self, level=rlevel):
ca = np.char.array(['Hi','There'])
assert_equal(ca.startswith('H'),[True,False])
def check_noncommutative_reduce_accumulate(self, level=rlevel):
"""Ticket #413"""
tosubtract = np.arange(5)
todivide = np.array([2.0, 0.5, 0.25])
assert_equal(np.subtract.reduce(tosubtract), -10)
assert_equal(np.divide.reduce(todivide), 16.0)
assert_array_equal(np.subtract.accumulate(tosubtract),
np.array([0, -1, -3, -6, -10]))
assert_array_equal(np.divide.accumulate(todivide),
np.array([2., 4., 16.]))
def check_mem_polymul(self, level=rlevel):
"""Ticket #448"""
np.polymul([],[1.])
def check_convolve_empty(self, level=rlevel):
"""Convolve should raise an error for empty input array."""
self.failUnlessRaises(AssertionError,np.convolve,[],[1])
self.failUnlessRaises(AssertionError,np.convolve,[1],[])
def check_multidim_byteswap(self, level=rlevel):
"""Ticket #449"""
r=np.array([(1,(0,1,2))], dtype="i2,3i2")
assert_array_equal(r.byteswap(),
np.array([(256,(0,256,512))],r.dtype))
def check_string_NULL(self, level=rlevel):
"""Changeset 3557"""
assert_equal(np.array("a\x00\x0b\x0c\x00").item(),
'a\x00\x0b\x0c')
def check_mem_string_concat(self, level=rlevel):
"""Ticket #469"""
x = np.array([])
np.append(x,'asdasd\tasdasd')
def check_matrix_multiply_by_1d_vector(self, level=rlevel) :
"""Ticket #473"""
def mul() :
np.mat(np.eye(2))*np.ones(2)
self.failUnlessRaises(ValueError,mul)
def check_junk_in_string_fields_of_recarray(self, level=rlevel):
"""Ticket #483"""
r = np.array([['abc']], dtype=[('var1', '|S20')])
assert str(r['var1'][0][0]) == 'abc'
def check_take_output(self, level=rlevel):
"""Ensure that 'take' honours output parameter."""
x = np.arange(12).reshape((3,4))
a = np.take(x,[0,2],axis=1)
b = np.zeros_like(a)
np.take(x,[0,2],axis=1,out=b)
assert_array_equal(a,b)
def check_array_str_64bit(self, level=rlevel):
"""Ticket #501"""
s = np.array([1, np.nan],dtype=np.float64)
errstate = np.seterr(all='raise')
try:
sstr = np.array_str(s)
finally:
np.seterr(**errstate)
def check_frompyfunc_endian(self, level=rlevel):
"""Ticket #503"""
from math import radians
uradians = np.frompyfunc(radians, 1, 1)
big_endian = np.array([83.4, 83.5], dtype='>f8')
little_endian = np.array([83.4, 83.5], dtype='<f8')
assert_almost_equal(uradians(big_endian).astype(float),
uradians(little_endian).astype(float))
def check_mem_string_arr(self, level=rlevel):
"""Ticket #514"""
s = "aaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaa"
t = []
np.hstack((t, s ))
def check_arr_transpose(self, level=rlevel):
"""Ticket #516"""
x = np.random.rand(*(2,)*16)
y = x.transpose(range(16))
def check_string_mergesort(self, level=rlevel):
"""Ticket #540"""
x = np.array(['a']*32)
assert_array_equal(x.argsort(kind='m'), np.arange(32))
def check_argmax_byteorder(self, level=rlevel):
"""Ticket #546"""
a = np.arange(3, dtype='>f')
assert a[a.argmax()] == a.max()
def check_numeric_random(self, level=rlevel):
"""Ticket #552"""
from numpy.oldnumeric.random_array import randint
randint(0,50,[2,3])
def check_poly_div(self, level=rlevel):
"""Ticket #553"""
u = np.poly1d([1,2,3])
v = np.poly1d([1,2,3,4,5])
q,r = np.polydiv(u,v)
assert_equal(q*v + r, u)
def check_poly_eq(self, level=rlevel):
"""Ticket #554"""
x = np.poly1d([1,2,3])
y = np.poly1d([3,4])
assert x != y
assert x == x
def check_rand_seed(self, level=rlevel):
"""Ticket #555"""
for l in np.arange(4):
np.random.seed(l)
def check_mem_deallocation_leak(self, level=rlevel):
"""Ticket #562"""
a = np.zeros(5,dtype=float)
b = np.array(a,dtype=float)
del a, b
def check_mem_insert(self, level=rlevel):
"""Ticket #572"""
np.lib.place(1,1,1)
def check_mem_on_invalid_dtype(self):
"Ticket #583"
self.failUnlessRaises(ValueError, np.fromiter, [['12',''],['13','']], str)
def check_dot_negative_stride(self, level=rlevel):
"""Ticket #588"""
x = np.array([[1,5,25,125.,625]])
y = np.array([[20.],[160.],[640.],[1280.],[1024.]])
z = y[::-1].copy()
y2 = y[::-1]
assert_equal(np.dot(x,z),np.dot(x,y2))
def check_object_casting(self, level=rlevel):
def rs():
x = np.ones([484,286])
y = np.zeros([484,286])
x |= y
self.failUnlessRaises(TypeError,rs)
def check_unicode_scalar(self, level=rlevel):
"""Ticket #600"""
import cPickle
x = np.array(["DROND", "DROND1"], dtype="U6")
el = x[1]
new = cPickle.loads(cPickle.dumps(el))
assert_equal(new, el)
def check_arange_non_native_dtype(self, level=rlevel):
"""Ticket #616"""
for T in ('>f4','<f4'):
dt = np.dtype(T)
assert_equal(np.arange(0,dtype=dt).dtype,dt)
assert_equal(np.arange(0.5,dtype=dt).dtype,dt)
assert_equal(np.arange(5,dtype=dt).dtype,dt)
def check_bool_indexing_invalid_nr_elements(self, level=rlevel):
s = np.ones(10,dtype=float)
x = np.array((15,),dtype=float)
def ia(x,s): x[(s>0)]=1.0
self.failUnlessRaises(ValueError,ia,x,s)
def check_mem_scalar_indexing(self, level=rlevel):
"""Ticket #603"""
x = np.array([0],dtype=float)
index = np.array(0,dtype=np.int32)
x[index]
def check_binary_repr_0_width(self, level=rlevel):
assert_equal(np.binary_repr(0,width=3),'000')
def check_fromstring(self, level=rlevel):
assert_equal(np.fromstring("12:09:09", dtype=int, sep=":"),
[12,9,9])
def check_searchsorted_variable_length(self, level=rlevel):
x = np.array(['a','aa','b'])
y = np.array(['d','e'])
assert_equal(x.searchsorted(y), [3,3])
def check_string_argsort_with_zeros(self, level=rlevel):
"""Check argsort for strings containing zeros."""
x = np.fromstring("\x00\x02\x00\x01", dtype="|S2")
assert_array_equal(x.argsort(kind='m'), np.array([1,0]))
assert_array_equal(x.argsort(kind='q'), np.array([1,0]))
def check_string_sort_with_zeros(self, level=rlevel):
"""Check sort for strings containing zeros."""
x = np.fromstring("\x00\x02\x00\x01", dtype="|S2")
y = np.fromstring("\x00\x01\x00\x02", dtype="|S2")
assert_array_equal(np.sort(x, kind="q"), y)
def check_hist_bins_as_list(self, level=rlevel):
"""Ticket #632"""
hist,edges = np.histogram([1,2,3,4],[1,2])
assert_array_equal(hist,[1,3])
assert_array_equal(edges,[1,2])
def check_copy_detection_zero_dim(self, level=rlevel):
"""Ticket #658"""
np.indices((0,3,4)).T.reshape(-1,3)
def check_flat_byteorder(self, level=rlevel):
"""Ticket #657"""
x = np.arange(10)
assert_array_equal(x.astype('>i4'),x.astype('<i4').flat[:])
assert_array_equal(x.astype('>i4').flat[:],x.astype('<i4'))
def check_uint64_from_negative(self, level=rlevel) :
assert_equal(np.uint64(-2), np.uint64(18446744073709551614))
def check_sign_bit(self, level=rlevel):
x = np.array([0,-0.0,0])
assert_equal(str(np.abs(x)),'[ 0. 0. 0.]')
def check_flat_index_byteswap(self, level=rlevel):
for dt in (np.dtype('<i4'),np.dtype('>i4')):
x = np.array([-1,0,1],dtype=dt)
assert_equal(x.flat[0].dtype, x[0].dtype)
def check_copy_detection_corner_case(self, level=rlevel):
"""Ticket #658"""
np.indices((0,3,4)).T.reshape(-1,3)
def check_object_array_refcounting(self, level=rlevel):
"""Ticket #633"""
if not hasattr(sys, 'getrefcount'):
return
# NB. this is probably CPython-specific
cnt = sys.getrefcount
a = object()
b = object()
c = object()
cnt0_a = cnt(a)
cnt0_b = cnt(b)
cnt0_c = cnt(c)
# -- 0d -> 1d broadcasted slice assignment
arr = np.zeros(5, dtype=np.object_)
arr[:] = a
assert cnt(a) == cnt0_a + 5
arr[:] = b
assert cnt(a) == cnt0_a
assert cnt(b) == cnt0_b + 5
arr[:2] = c
assert cnt(b) == cnt0_b + 3
assert cnt(c) == cnt0_c + 2
del arr
# -- 1d -> 2d broadcasted slice assignment
arr = np.zeros((5, 2), dtype=np.object_)
arr0 = np.zeros(2, dtype=np.object_)
arr0[0] = a
assert cnt(a) == cnt0_a + 1
arr0[1] = b
assert cnt(b) == cnt0_b + 1
arr[:,:] = arr0
assert cnt(a) == cnt0_a + 6
assert cnt(b) == cnt0_b + 6
arr[:,0] = None
assert cnt(a) == cnt0_a + 1
del arr, arr0
# -- 2d copying + flattening
arr = np.zeros((5, 2), dtype=np.object_)
arr[:,0] = a
arr[:,1] = b
assert cnt(a) == cnt0_a + 5
assert cnt(b) == cnt0_b + 5
arr2 = arr.copy()
assert cnt(a) == cnt0_a + 10
assert cnt(b) == cnt0_b + 10
arr2 = arr[:,0].copy()
assert cnt(a) == cnt0_a + 10
assert cnt(b) == cnt0_b + 5
arr2 = arr.flatten()
assert cnt(a) == cnt0_a + 10
assert cnt(b) == cnt0_b + 10
del arr, arr2
# -- concatenate, repeat, take, choose
arr1 = np.zeros((5, 1), dtype=np.object_)
arr2 = np.zeros((5, 1), dtype=np.object_)
arr1[...] = a
arr2[...] = b
assert cnt(a) == cnt0_a + 5
assert cnt(b) == cnt0_b + 5
arr3 = np.concatenate((arr1, arr2))
assert cnt(a) == cnt0_a + 5 + 5
assert cnt(b) == cnt0_b + 5 + 5
arr3 = arr1.repeat(3, axis=0)
assert cnt(a) == cnt0_a + 5 + 3*5
arr3 = arr1.take([1,2,3], axis=0)
assert cnt(a) == cnt0_a + 5 + 3
x = np.array([[0],[1],[0],[1],[1]], int)
arr3 = x.choose(arr1, arr2)
assert cnt(a) == cnt0_a + 5 + 2
assert cnt(b) == cnt0_b + 5 + 3
def check_mem_custom_float_to_array(self, level=rlevel):
"""Ticket 702"""
class MyFloat:
def __float__(self):
return 1
tmp = np.atleast_1d([MyFloat()])
tmp2 = tmp.astype(float)
def check_object_array_refcount_self_assign(self, level=rlevel):
"""Ticket #711"""
class VictimObject(object):
deleted = False
def __del__(self):
self.deleted = True
d = VictimObject()
arr = np.zeros(5, dtype=np.object_)
arr[:] = d
del d
arr[:] = arr # refcount of 'd' might hit zero here
assert not arr[0].deleted
arr[:] = arr # trying to induce a segfault by doing it again...
assert not arr[0].deleted
def check_mem_fromiter_invalid_dtype_string(self, level=rlevel):
x = [1,2,3]
self.failUnlessRaises(ValueError,
np.fromiter, [xi for xi in x], dtype='S')
def check_reduce_big_object_array(self, level=rlevel):
"""Ticket #713"""
oldsize = np.setbufsize(10*16)
a = np.array([None]*161, object)
assert not np.any(a)
np.setbufsize(oldsize)
def check_mem_0d_array_index(self, level=rlevel):
"""Ticket #714"""
np.zeros(10)[np.array(0)]
def check_floats_from_string(self, level=rlevel):
"""Ticket #640, floats from string"""
fsingle = np.single('1.234')
fdouble = np.double('1.234')
flongdouble = np.longdouble('1.234')
assert_almost_equal(fsingle, 1.234)
assert_almost_equal(fdouble, 1.234)
assert_almost_equal(flongdouble, 1.234)
def check_complex_dtype_printing(self, level=rlevel):
dt = np.dtype([('top', [('tiles', ('>f4', (64, 64)), (1,)),
('rtile', '>f4', (64, 36))], (3,)),
('bottom', [('bleft', ('>f4', (8, 64)), (1,)),
('bright', '>f4', (8, 36))])])
assert_equal(str(dt),
"[('top', [('tiles', ('>f4', (64, 64)), (1,)), "
"('rtile', '>f4', (64, 36))], (3,)), "
"('bottom', [('bleft', ('>f4', (8, 64)), (1,)), "
"('bright', '>f4', (8, 36))])]")
def check_nonnative_endian_fill(self, level=rlevel):
""" Non-native endian arrays were incorrectly filled with scalars before
r5034.
"""
if sys.byteorder == 'little':
dtype = np.dtype('>i4')
else:
dtype = np.dtype('<i4')
x = np.empty([1], dtype=dtype)
x.fill(1)
assert_equal(x, np.array([1], dtype=dtype))
def check_asfarray_none(self, level=rlevel):
"""Test for changeset r5065"""
assert_array_equal(np.array([np.nan]), np.asfarray([None]))
def check_dot_alignment_sse2(self, level=rlevel):
"""Test for ticket #551, changeset r5140"""
x = np.zeros((30,40))
y = pickle.loads(pickle.dumps(x))
# y is now typically not aligned on a 8-byte boundary
z = np.ones((1, y.shape[0]))
# This shouldn't cause a segmentation fault:
np.dot(z, y)
def check_astype_copy(self, level=rlevel):
"""Ticket #788, changeset r5155"""
# The test data file was generated by scipy.io.savemat.
# The dtype is float64, but the isbuiltin attribute is 0.
data_dir = path.join(path.dirname(__file__), 'data')
filename = path.join(data_dir, "astype_copy.pkl")
xp = pickle.load(open(filename))
xpd = xp.astype(np.float64)
assert (xp.__array_interface__['data'][0] !=
xpd.__array_interface__['data'][0])
def check_compress_small_type(self, level=rlevel):
"""Ticket #789, changeset 5217.
"""
# compress with out argument segfaulted if cannot cast safely
import numpy as np
a = np.array([[1, 2], [3, 4]])
b = np.zeros((2, 1), dtype = np.single)
try:
a.compress([True, False], axis = 1, out = b)
raise AssertionError("compress with an out which cannot be " \
"safely casted should not return "\
"successfully")
except TypeError:
pass
def check_recarray_tolist(self, level=rlevel):
"""Ticket #793, changeset r5215
"""
a = np.recarray(2, formats="i4,f8,f8", names="id,x,y")
b = a.tolist()
assert( a[0].tolist() == b[0])
assert( a[1].tolist() == b[1])
def check_large_fancy_indexing(self, level=rlevel):
# Large enough to fail on 64-bit.
nbits = np.dtype(np.intp).itemsize * 8
thesize = int((2**nbits)**(1.0/5.0)+1)
def dp():
n = 3
a = np.ones((n,)*5)
i = np.random.randint(0,n,size=thesize)
a[np.ix_(i,i,i,i,i)] = 0
def dp2():
n = 3
a = np.ones((n,)*5)
i = np.random.randint(0,n,size=thesize)
g = a[np.ix_(i,i,i,i,i)]
self.failUnlessRaises(ValueError, dp)
self.failUnlessRaises(ValueError, dp2)
if __name__ == "__main__":
NumpyTest().run()
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