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from numpy.testing import *
import numpy as np
import StringIO
class TestSaveTxt(NumpyTestCase):
def test_array(self):
a =np.array( [[1,2],[3,4]], float)
c = StringIO.StringIO()
np.savetxt(c, a)
c.seek(0)
assert(c.readlines(),
['1.000000000000000000e+00 2.000000000000000000e+00\n',
'3.000000000000000000e+00 4.000000000000000000e+00\n'])
a =np.array( [[1,2],[3,4]], int)
c = StringIO.StringIO()
np.savetxt(c, a, fmt='%d')
c.seek(0)
assert_equal(c.readlines(), ['1 2\n', '3 4\n'])
def test_1D(self):
a = np.array([1,2,3,4], int)
c = StringIO.StringIO()
np.savetxt(c, a, fmt='%d')
c.seek(0)
lines = c.readlines()
assert_equal(lines, ['1\n', '2\n', '3\n', '4\n'])
def test_record(self):
a = np.array([(1, 2), (3, 4)], dtype=[('x', 'i4'), ('y', 'i4')])
c = StringIO.StringIO()
np.savetxt(c, a, fmt='%d')
c.seek(0)
assert_equal(c.readlines(), ['1 2\n', '3 4\n'])
def test_delimiter(self):
a = np.array([[1., 2.], [3., 4.]])
c = StringIO.StringIO()
np.savetxt(c, a, delimiter=',', fmt='%d')
c.seek(0)
assert_equal(c.readlines(), ['1,2\n', '3,4\n'])
def test_format(self):
a = np.array([(1, 2), (3, 4)])
c = StringIO.StringIO()
# Sequence of formats
np.savetxt(c, a, fmt=['%02d', '%3.1f'])
c.seek(0)
assert_equal(c.readlines(), ['01 2.0\n', '03 4.0\n'])
# A single multiformat string
c = StringIO.StringIO()
np.savetxt(c, a, fmt='%02d : %3.1f')
c.seek(0)
lines = c.readlines()
assert_equal(lines, ['01 : 2.0\n', '03 : 4.0\n'])
# Specify delimiter, should be overiden
c = StringIO.StringIO()
np.savetxt(c, a, fmt='%02d : %3.1f', delimiter=',')
c.seek(0)
lines = c.readlines()
assert_equal(lines, ['01 : 2.0\n', '03 : 4.0\n'])
class TestLoadTxt(NumpyTestCase):
def test_record(self):
c = StringIO.StringIO()
c.write('1 2\n3 4')
c.seek(0)
x = np.loadtxt(c, dtype=[('x', np.int32), ('y', np.int32)])
a = np.array([(1, 2), (3, 4)], dtype=[('x', 'i4'), ('y', 'i4')])
assert_array_equal(x, a)
d = StringIO.StringIO()
d.write('M 64.0 75.0\nF 25.0 60.0')
d.seek(0)
mydescriptor = {'names': ('gender','age','weight'),
'formats': ('S1',
'i4', 'f4')}
b = np.array([('M', 64.0, 75.0),
('F', 25.0, 60.0)], dtype=mydescriptor)
y = np.loadtxt(d, dtype=mydescriptor)
assert_array_equal(y, b)
def test_array(self):
c = StringIO.StringIO()
c.write('1 2\n3 4')
c.seek(0)
x = np.loadtxt(c, dtype=int)
a = np.array([[1,2],[3,4]], int)
assert_array_equal(x, a)
c.seek(0)
x = np.loadtxt(c, dtype=float)
a = np.array([[1,2],[3,4]], float)
assert_array_equal(x, a)
def test_1D(self):
c = StringIO.StringIO()
c.write('1\n2\n3\n4\n')
c.seek(0)
x = np.loadtxt(c, dtype=int)
a = np.array([1,2,3,4], int)
assert_array_equal(x, a)
c = StringIO.StringIO()
c.write('1,2,3,4\n')
c.seek(0)
x = np.loadtxt(c, dtype=int, delimiter=',')
a = np.array([1,2,3,4], int)
assert_array_equal(x, a)
def test_missing(self):
c = StringIO.StringIO()
c.write('1,2,3,,5\n')
c.seek(0)
x = np.loadtxt(c, dtype=int, delimiter=',', \
converters={3:lambda s: int(s or -999)})
a = np.array([1,2,3,-999,5], int)
assert_array_equal(x, a)
def test_comments(self):
c = StringIO.StringIO()
c.write('# comment\n1,2,3,5\n')
c.seek(0)
x = np.loadtxt(c, dtype=int, delimiter=',', \
comments='#')
a = np.array([1,2,3,5], int)
assert_array_equal(x, a)
def test_skiprows(self):
c = StringIO.StringIO()
c.write('comment\n1,2,3,5\n')
c.seek(0)
x = np.loadtxt(c, dtype=int, delimiter=',', \
skiprows=1)
a = np.array([1,2,3,5], int)
assert_array_equal(x, a)
c = StringIO.StringIO()
c.write('# comment\n1,2,3,5\n')
c.seek(0)
x = np.loadtxt(c, dtype=int, delimiter=',', \
skiprows=1)
a = np.array([1,2,3,5], int)
assert_array_equal(x, a)
def test_usecols(self):
a =np.array( [[1,2],[3,4]], float)
c = StringIO.StringIO()
np.savetxt(c, a)
c.seek(0)
x = np.loadtxt(c, dtype=float, usecols=(1,))
assert_array_equal(x, a[:,1])
a =np.array( [[1,2,3],[3,4,5]], float)
c = StringIO.StringIO()
np.savetxt(c, a)
c.seek(0)
x = np.loadtxt(c, dtype=float, usecols=(1,2))
assert_array_equal(x, a[:,1:])
class Testfromregex(NumpyTestCase):
def test_record(self):
c = StringIO.StringIO()
c.write('1.312 foo\n1.534 bar\n4.444 qux')
c.seek(0)
dt = [('num', np.float64), ('val', 'S3')]
x = np.fromregex(c, r"([0-9.]+)\s+(...)", dt)
a = np.array([(1.312, 'foo'), (1.534, 'bar'), (4.444, 'qux')], dtype=dt)
assert_array_equal(x, a)
def test_record_2(self):
return # pass this test until #736 is resolved
c = StringIO.StringIO()
c.write('1312 foo\n1534 bar\n4444 qux')
c.seek(0)
dt = [('num', np.int32), ('val', 'S3')]
x = np.fromregex(c, r"(\d+)\s+(...)", dt)
a = np.array([(1312, 'foo'), (1534, 'bar'), (4444, 'qux')], dtype=dt)
assert_array_equal(x, a)
def test_record_3(self):
c = StringIO.StringIO()
c.write('1312 foo\n1534 bar\n4444 qux')
c.seek(0)
dt = [('num', np.float64)]
x = np.fromregex(c, r"(\d+)\s+...", dt)
a = np.array([(1312,), (1534,), (4444,)], dtype=dt)
assert_array_equal(x, a)
if __name__ == "__main__":
NumpyTest().run()
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