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Change Log
==========
1.1.0: unreleased
-----------------
* misc
* remove '3D-XRD' 1 'XRD-CT' classes as unused
1.0.11: 2024/10/07
------------------
* h52nx: modify bliss file scan ordering (based on each scan 'start_time' when existing)
1.0.9: 2024/08/27
------------------
* h52nx: handle z-series v 3 (PR 258)
1.0.0: 2024/02/23
------------------
* app
* add `nx-copy`: application to copy NXtomo contained in a file (Update relative links of the HDF5 VDS if any). (PR 188)
* misc
* remove 'is_xrdct_entry' (PR 209)
* rework doc and move to sphinx-pydata-theme
* move to silx 2.0
0.13.2: 2023/08/03
------------------
* converter
* hdf5:
* add bliss_orginal_files option
0.13.0: 2023/08/01
------------------
* converter
* remove x and y real pixel size metadata
* remove magnification metadata
* edf2
* add option `output-checks`: allow check on the generated volume (PR 155)
* add option `delete-edf`: allow deletion of the edf input files once the conversion is done (and check if asked) (PR 155)
* hdf5
* benefit from 'technique/image' bliss metadata when possible (PR 147, 168)
* remove plugins system as never used (PR 177)
* improve pcotomo robustness (PR 160, PR 159)
* `estimated_cor_from_motor` is now set for 360 degree scan (and not only 180) (PR 161)
* improve robustness against cancel scan (PR 158, 165)
* remove `real pixel size` and `magnification`
* nexus
* improve robustness and readibility of node name vs path handling (PR 173)
* app
* add `edf2nx-check`: application to allow check from a previous conversion and optionnaly remove EDF source files. (PR 164)
* add `split-nxfile`: application to split a file containing several NXtomo into single-NXtomo files. (PR 172)
* add `z-concatenate-scans`: application to concatenate a z-serie of scan into a single NXtomo (PR 174, 175).
* `zstages2nxs`: add `output_filename_template` option (PR 176)
* deprecate `h5-quick-start` in favor of `h5-config` (PR 166)
* deprecate `edf-quick-start` in favor of `edf-config` (PR 166)
* misc
* deprecate `from_dx_to_nx` for `from_dx_config_to_nx` (PR 167)
* replace string.format by f-strings when possible (PR 154)
* doc: add an example of btaach processing
0.12.0: 2023/02/23
------------------
* app
* `zstages2nxs` command added (PR 145)
* converter
* hdf5
* add frame flip information (PR 109)
* edf2nx
* better handling of current units (PR 150)
* misc
* get rid of numpy distutils for packaging (PR 151)
0.11.0: 2022/12/15
------------------
* converter
* hdf5:
* handle new path with {detector_name}
* handle flips
* fix: was unable to find pixel position and energy for zserie
0.10.9: 2022/10/26
------------------
* converter
* hdf5converter: handle EBStomo pcotomo second version
0.10.1: 2022/08/31
------------------
* converter
* EDFConfig: default unit for distance, x, y and z translations from .info file is now millimeter
* edf2nx: fix deduction of field of view.
0.10.0: 2022/08/30
------------------
* converter
* remove deprecated 'h5_to_nx' function (deprecated since 0.5.0)
* hdf5converter
* add management of magnification (PR 110). Not handled for by edfconverter
* add function to do a subselection of an NXtomo from the rotation angle and add dedicated parameter for pcotomo conversion to refine NXtomo to be created (PR 100)
* edf2nx
* add an option to avoid data duplication (PR 114, 115, 118)
* nexus
* add probe to NXsource (PR 117)
* improve NXdetector.data setter (PR 122)
* rename attributes `unit` to `units`
0.9.0: 2022/06/24
-----------------
* converter
* hdf5
* add handling of the machine electrical current (PR 106)
* add management of `is_rearranged` attribute (PR 111)
* edf
* add management of a configuration file (PR 104)
* nexus
* add Nxtomo concatenation (PR109)
0.8.0: 2021/06/04
-----------------
* converter
* hdf5
* add 'bam_single_file' option (PR 96)
* add pcotomo management (PR 91, 88)
* add nexus module providing API to edit an NXtomo (PR 87)
0.7.0: 2021/01/07
-----------------
* converter
* hdf5: management of ExternalLink as entry (case of bliss proposal file, PR 85)
* edf
* fix issues with progress (PR 80)
* patch-nx
* add option to convert all frame of a given type (PR 84)
* dxfile2nx
* allow to provide pixel size as a single value (PR 77)
* miscellaneous::
* add some missing aliases flat/ref (PR 83)
* benefit from validator (PR 81)
0.6.0: 2021/10/04
-----------------
* app
* add 'dxfile2nx' application. Allow to convert from dxfile format to NXtomo format
* h52nx
* add "duplicate_data" option to force frame duplication from the command line.
* add 'h5-3dxrd-2nx': convert from to 3D XRD - bliss-hdf5 to (enhance) NXtomo Format .
* converter
* add dxfileconverter
0.5.0: 2021/04/20
-----------------
* converter
* hdf5
* rework virtual dataset creation
* insure the number of projection found is that same as the expected number of projection (tomo_n)
* add `start_time` and `end_time`
* handle configuration file
* add `HDF5config` and `HDF5ConfigHandler`
* improve research of keys / path. First try to retrieve a dataset with the expected number of elements. If fail return the first dataset fitting a path.
* add `ignore_sub_entries` to skip some scan
* add a warning if no acquisition are found
* utils
* rework `_insert_frame_data` to use a class instead `_FrameAppender`
* fix management of negative indexing
* app
* patch-nx
* add an option `--embed-data`
* rename `tomoh52nx` to `h52nx`. Deprecate `tomoh52nx`.
* rename `tomoedf2nx` to `edf2nx`. Deprecate `tomoedf2nx`.
* `h52nx`
* can now take a configuration file in parameter ("--config" option)
* add option `--ignore-sub-entries`
0.4.0: 2020/11/09
-----------------
* requires h5py >= 3
* utils:
* add `change_image_key_control` function to modify frame type inplace
* add `add_dark_flat_nx_file` function to add dark or flat in an existing `NXTomo` entry
* converter
* h5_to_nx:
* add management of 'proposal file': handle External / SoftLink
* insure relative path is given when converting the file
* magnified_pixel_size will not be write anymore. If a magnified / sample pixel size is discover then this will be saved as the 'pixel_size'.
* add an option to display_advancement or not.
* split "zseries" according to z value
* add NXdata information to display detector/data from root as image
* move format version to 1.0
* app:
* add patch-nx application to modify an existing `NXTomo`
* add dark or flat series
* modify frame type
* tomoh52nx:
* warning if we try to convert a file containing some `NXTomo` entry
* create directories for output file if necessary
* check write rights on output file
* split "zseries" according to z value
* miscellaneous::
* adopt 'black' coding style
0.3.4: 2020/10/05
-----------------
* converter: fix log
0.3.3: 2020/08/26
-----------------
* h5_to_nx:
* add set-param option to let the user define some parameters values like energy if he knows it is missing (and avoid asking him n times).
* io: add management of hdf5 files from tomoscan.io.HDF5File
0.3.1: 2020/08/19
-----------------
* add field_of_view parameter
* add plugin management (allows user to define motor position value from a python script) - PR !19
0.3.0: 2020/03/20
-----------------
* app: add several option to define titles
* h5_to_nx:
* add possibility to add plugins for defining new motor position
* units: move distances to meter
* edf_to_nx:
* units: move distances to meter
0.2.0: 2020/22/04
-----------------
* setup: add entry point on __main__
* converter
* `h5_to_nx`: add a possible callback to give input
* doc
* add API documentation
* add tutorials for `tomoedf2nx` and `tomoh5tonx`
0.1.0: 2020/03/12
-----------------
* app
* add application `tomoedf2nx`: convert acquisition using old bliss and EDF to .hdf5 file format, nexus (NXtomo) compliant format.
* add application `tomoh5tonx`: convert acquisition using bliss/hdf5 to a nexus (NXtomo) compliant format.
* converter
* add `h5_to_nx` function to convert from bliss .hdf5 to nexus (NXtomo) compliant format.
* add `get_bliss_tomo_entries` function to return the bliss 'roor' entries (for now named 'tomo:basic', 'tomo:fullturn' ...)
|
