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|
From: Roland Mas <roland.mas@entierement.net>
Date: Sun, 30 Nov 2025 15:16:47 +0100
Subject: Disable tests requiring network access
---
nxtomomill/app/tests/test_bliss_fluo2nx_app.py | 5 +++++
nxtomomill/app/tests/test_fluo2nx_app.py | 7 +++++++
nxtomomill/converter/fluo/tests/test_fluoscan2D.py | 2 +-
nxtomomill/converter/fluo/tests/test_fluoscan3D.py | 2 +-
.../converter/hdf5/acquisition/tests/test_acquisition_utils.py | 1 +
nxtomomill/converter/hdf5/acquisition/tests/test_back_and_forth.py | 3 +++
nxtomomill/converter/hdf5/acquisition/tests/test_legacy.py | 2 ++
nxtomomill/converter/hdf5/tests/test_frame_flip.py | 1 +
nxtomomill/converter/hdf5/tests/test_hdf5converter.py | 2 ++
9 files changed, 23 insertions(+), 2 deletions(-)
diff --git a/nxtomomill/app/tests/test_bliss_fluo2nx_app.py b/nxtomomill/app/tests/test_bliss_fluo2nx_app.py
index 7c8327b..4025aab 100644
--- a/nxtomomill/app/tests/test_bliss_fluo2nx_app.py
+++ b/nxtomomill/app/tests/test_bliss_fluo2nx_app.py
@@ -6,6 +6,8 @@ import numpy as np
import h5py
+import pytest
+
try:
from nxtomomill.tests.datasets import GitlabDataset
except ImportError:
@@ -16,6 +18,7 @@ from nxtomomill.app.blissfluo2nx import main
logging.disable(logging.INFO)
+@pytest.mark.skip(reason="No network access")
def test_blissfluo2nx_application_all_dets():
"""test nxtomomill fluo2nx CLI with default parameters (handle all detectors found)"""
scan_dir = GitlabDataset.get_dataset("blissfluo_datasets3D")
@@ -46,6 +49,7 @@ def test_blissfluo2nx_application_all_dets():
), "Discrepancy in grid_Ardesia_Al_K rotation angles."
+@pytest.mark.skip(reason="No network access")
def test_blissfluo2nx_application_single_det():
"""test nxtomomill fluo2nx CLI targetting a single existing detector"""
scan_dir = GitlabDataset.get_dataset("blissfluo_datasets3D")
@@ -78,6 +82,7 @@ def test_blissfluo2nx_application_single_det():
), "Discrepancy in grid_Ardesia_Al_K rotation angles."
+@pytest.mark.skip(reason="No network access")
def test_blissfluo2nx_application_two_det():
"""test nxtomomill fluo2nx CLI targetting two existing detector"""
scan_dir = GitlabDataset.get_dataset("blissfluo_datasets3D")
diff --git a/nxtomomill/app/tests/test_fluo2nx_app.py b/nxtomomill/app/tests/test_fluo2nx_app.py
index 70e4114..94f7c38 100644
--- a/nxtomomill/app/tests/test_fluo2nx_app.py
+++ b/nxtomomill/app/tests/test_fluo2nx_app.py
@@ -5,12 +5,15 @@ import logging
import h5py
+import pytest
+
from tomoscan.tests.datasets import GitlabDataset
from nxtomomill.app.fluo2nx import main
logging.disable(logging.INFO)
+@pytest.mark.skip(reason="No network access")
def test_fluo2nx_application_all_dets(tmp_path):
"""test nxtomomill fluo2nx CLI with default parameters (handle all detectors found)"""
scan_dir = GitlabDataset.get_dataset("fluo_datasets")
@@ -25,6 +28,7 @@ def test_fluo2nx_application_all_dets(tmp_path):
), f"Number of entries ({len(list(f.keys()))}) not as expected (45)."
+@pytest.mark.skip(reason="No network access")
def test_fluo2nx_application_single_det(tmp_path):
"""test nxtomomill fluo2nx CLI targetting a single existing detector"""
scan_dir = GitlabDataset.get_dataset("fluo_datasets")
@@ -48,6 +52,7 @@ def test_fluo2nx_application_single_det(tmp_path):
), f"Number of entries ({len(list(f.keys()))}) not as expected (15)."
+@pytest.mark.skip(reason="No network access")
def test_fluo2nx_application_two_dets(tmp_path):
"""test nxtomomill fluo2nx CLI targetting two existing detectors"""
scan_dir = GitlabDataset.get_dataset("fluo_datasets")
@@ -72,6 +77,7 @@ def test_fluo2nx_application_two_dets(tmp_path):
), f"Number of entries ({len(list(f.keys()))}) not as expected (30)."
+@pytest.mark.skip(reason="No network access")
def test_fluo2nx_application_2D(tmp_path):
scan_dir = GitlabDataset.get_dataset("fluo_datasets2D")
output_file = os.path.join(tmp_path, "nexus_file_2d.nx")
@@ -94,6 +100,7 @@ def test_fluo2nx_application_2D(tmp_path):
), f"Number of entries ({len(list(f.keys()))}) not as expected (4)."
+@pytest.mark.skip(reason="No network access")
def test_fluo2nx_application_2D_single_det(tmp_path):
"""test nxtomomill fluo2nx CLI targetting a single existing detector"""
scan_dir = GitlabDataset.get_dataset("fluo_datasets2D")
diff --git a/nxtomomill/converter/fluo/tests/test_fluoscan2D.py b/nxtomomill/converter/fluo/tests/test_fluoscan2D.py
index 40cd080..742084a 100644
--- a/nxtomomill/converter/fluo/tests/test_fluoscan2D.py
+++ b/nxtomomill/converter/fluo/tests/test_fluoscan2D.py
@@ -10,7 +10,6 @@ from nxtomomill.tests.datasets import GitlabDataset
logging.disable(logging.INFO)
-
@pytest.fixture(scope="class")
def fluodata2D(request):
cls = request.cls
@@ -23,6 +22,7 @@ def fluodata2D(request):
)
+@pytest.mark.skip(reason="No network access")
@pytest.mark.usefixtures("fluodata2D")
class TestFluo2D:
def test_all_detectors(self):
diff --git a/nxtomomill/converter/fluo/tests/test_fluoscan3D.py b/nxtomomill/converter/fluo/tests/test_fluoscan3D.py
index 3f67f36..8bd7527 100644
--- a/nxtomomill/converter/fluo/tests/test_fluoscan3D.py
+++ b/nxtomomill/converter/fluo/tests/test_fluoscan3D.py
@@ -9,7 +9,6 @@ from nxtomomill.tests.datasets import GitlabDataset
logging.disable(logging.INFO)
-
@pytest.fixture(scope="class")
def fluodata3D(request):
cls = request.cls
@@ -22,6 +21,7 @@ def fluodata3D(request):
)
+@pytest.mark.skip(reason="No network access")
@pytest.mark.usefixtures("fluodata3D")
class TestFluo3D:
def test_all_detectors(self):
diff --git a/nxtomomill/converter/hdf5/acquisition/tests/test_acquisition_utils.py b/nxtomomill/converter/hdf5/acquisition/tests/test_acquisition_utils.py
index 1d7d4c4..18b6832 100644
--- a/nxtomomill/converter/hdf5/acquisition/tests/test_acquisition_utils.py
+++ b/nxtomomill/converter/hdf5/acquisition/tests/test_acquisition_utils.py
@@ -233,6 +233,7 @@ def test_group_z_series(tmp_path):
)
+@pytest.mark.skip(reason="No network access")
@pytest.mark.parametrize(
"bliss_scan_path, scan_type",
{
diff --git a/nxtomomill/converter/hdf5/acquisition/tests/test_back_and_forth.py b/nxtomomill/converter/hdf5/acquisition/tests/test_back_and_forth.py
index 1a52a2b..7b6b953 100644
--- a/nxtomomill/converter/hdf5/acquisition/tests/test_back_and_forth.py
+++ b/nxtomomill/converter/hdf5/acquisition/tests/test_back_and_forth.py
@@ -4,6 +4,8 @@ import os
import pint
import numpy
+import pytest
+
from nxtomo.application.nxtomo import NXtomo
from nxtomo.nxobject.nxdetector import ImageKey
@@ -14,6 +16,7 @@ from nxtomomill.io.config import TomoHDF5Config
_ureg = pint.get_application_registry()
+@pytest.mark.skip(reason="No network access")
def test_back_and_forth_conversion(tmp_path):
"""test nxtomomill fluo2nx CLI with default parameters (handle all detectors found)"""
scan_dir = GitlabDataset.get_dataset("h5_datasets")
diff --git a/nxtomomill/converter/hdf5/acquisition/tests/test_legacy.py b/nxtomomill/converter/hdf5/acquisition/tests/test_legacy.py
index c4a339f..be6413c 100644
--- a/nxtomomill/converter/hdf5/acquisition/tests/test_legacy.py
+++ b/nxtomomill/converter/hdf5/acquisition/tests/test_legacy.py
@@ -30,6 +30,7 @@ def WGN_01_0000_P_110_8128_D_129_Dataset():
return Path(os.path.join(scan_dir, "legacy", "WGN_01_0000_P_110_8128_D_129.h5"))
+@pytest.mark.skip(reason="No network access")
def test_S59_68p41b_16mm_6p5mm_F8_0001_dataset(
S59_68p41b_16mm_6p5mm_F8_0001_Dataset, tmp_path
):
@@ -99,6 +100,7 @@ def test_S59_68p41b_16mm_6p5mm_F8_0001_dataset(
assert nxtomo.instrument.detector.y_pixel_size == 6.5 * _ureg.micrometer
+@pytest.mark.skip(reason="No network access")
def test_WGN_01_0000_P_110_8128_D_129(WGN_01_0000_P_110_8128_D_129_Dataset, tmp_path):
"""test 'WGN_01_0000_P_110_8128_D_129' legacy dataset"""
output_file = tmp_path / "WGN_01_0000_P_110_8128_D_129_Dataset.nx"
diff --git a/nxtomomill/converter/hdf5/tests/test_frame_flip.py b/nxtomomill/converter/hdf5/tests/test_frame_flip.py
index 27468b5..9f2d0eb 100644
--- a/nxtomomill/converter/hdf5/tests/test_frame_flip.py
+++ b/nxtomomill/converter/hdf5/tests/test_frame_flip.py
@@ -24,6 +24,7 @@ def dataset_id16a(tmp_path):
)
+@pytest.mark.skip(reason="No network access")
@pytest.mark.parametrize("soft_flip", ((True, False), (False, True)))
@pytest.mark.parametrize("mechanical_flip", ((False, False), (True, True)))
def test_frame_flips(tmp_path, dataset_id16a, soft_flip, mechanical_flip):
diff --git a/nxtomomill/converter/hdf5/tests/test_hdf5converter.py b/nxtomomill/converter/hdf5/tests/test_hdf5converter.py
index 1d640e0..1923e9c 100644
--- a/nxtomomill/converter/hdf5/tests/test_hdf5converter.py
+++ b/nxtomomill/converter/hdf5/tests/test_hdf5converter.py
@@ -1298,6 +1298,7 @@ files_to_expected_result: dict[str, tuple[str]] = {
}
+@pytest.mark.skip(reason="No network access")
@pytest.mark.parametrize(
"input_file,expected_result_file_names", files_to_expected_result.items()
)
@@ -1323,6 +1324,7 @@ def test_output_file_indexing(
)
+@pytest.mark.skip(reason="No network access")
def test_id16a_use_case(tmp_path):
"""
Dummy test to match the ID16a use case: providing the input and output file.
|
