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import parasail
from unittest import TestCase, main
class Tests(TestCase):
def test1(self):
result = parasail.sw("asdf", "asdf", 10, 1, parasail.blosum62)
self.assertEqual(result.score, 20)
def test2(self):
result = parasail.sw("asdf", "asdf", 10, 1, parasail.pam50)
self.assertEqual(result.score, 27)
def test3(self):
matrix = parasail.matrix_create("acgt", 1, -1)
result = parasail.sw("acgt", "acgt", 10, 1, matrix)
self.assertEqual(result.score, 4)
import pytest
import platform
@pytest.mark.skipif(platform.uname().machine=='aarch64', reason="FIXME: test4 ends up in Segmentation fault on arm64")
def test4(self):
profile = parasail.profile_create_8("asdf", parasail.blosum62)
result = parasail.sw_striped_profile_8(profile, "asdf", 10, 1)
self.assertEqual(result.score, 20)
if __name__ == '__main__':
main()
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