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import parasail
from unittest import TestCase, main
class Tests(TestCase):
def print_traceback_attributes(self, traceback):
print(traceback)
print(traceback.query)
print(traceback.comp)
print(traceback.ref)
def test1(self):
matrix = parasail.matrix_create("ACGT", 2, 1)
result = parasail.sw_trace("ACGT", "AcgT", 10, 1, matrix)
traceback = result.traceback
self.print_traceback_attributes(traceback)
def test21(self):
matrix = parasail.matrix_create("ACGTacgt", 2, 1, True)
result = parasail.sw_trace("ACGT", "AcgT", 10, 1, matrix)
traceback = result.traceback
self.print_traceback_attributes(traceback)
def test22(self):
matrix = parasail.matrix_create("ACGTacgt", 2, 1, True)
result = parasail.sw_trace("ACGT", "AcgT", 10, 1, matrix)
traceback = result.get_traceback(case_sensitive=True)
self.print_traceback_attributes(traceback)
def test3(self):
parasail.set_case_sensitive(True)
matrix = parasail.matrix_create("ACGTacgt", 2, 1)
result = parasail.sw_trace("ACGT", "AcgT", 10, 1, matrix)
traceback = result.traceback
self.print_traceback_attributes(traceback)
def test4(self):
parasail.set_case_sensitive(True)
matrix = parasail.matrix_create("ACGT", 2, 1)
result = parasail.sw_trace("ACGT", "AcgT", 10, 1, matrix)
traceback = result.traceback
self.print_traceback_attributes(traceback)
if __name__ == '__main__':
main()
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