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import parasail
from unittest import TestCase, main
def print_cigar_attributes(cigar):
print(cigar)
print(cigar.seq)
print(cigar.len)
print(cigar.beg_query)
print(cigar.beg_ref)
print(cigar.decode)
def print_traceback_attributes(traceback):
print(traceback)
print(traceback.query)
print(traceback.comp)
print(traceback.ref)
class Tests(TestCase):
def test0(self):
result = parasail.sw("asdf", "asdf", 10, 1, parasail.blosum62)
with self.assertRaises(AttributeError):
print_cigar_attributes(result.cigar)
def test1(self):
result = parasail.sw("asdf", "asdf", 10, 1, parasail.blosum62)
with self.assertRaises(AttributeError):
print_traceback_attributes(result.traceback)
def test2(self):
result = parasail.sw_trace("asdf", "asdf", 10, 1, parasail.blosum62)
print_cigar_attributes(result.cigar)
def test3(self):
result = parasail.sw_trace("asdf", "asdf", 10, 1, parasail.blosum62)
print_traceback_attributes(result.traceback)
if __name__ == '__main__':
main()
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