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.PHONY: all clean install dev-install test doc
SHELL = /bin/bash -e
all: install
install:
@which pip > /dev/null
@pip freeze|grep 'pbcommand=='>/dev/null \
&& pip uninstall -y pbcommand \
|| echo -n ''
@pip install ./
clean:
rm -rf build/;\
find . -name "*.egg-info" | xargs rm -rf;\
find . -name "*.pyc" | xargs rm -f;\
find . -name "*.err" | xargs rm -f;\
find . -name "*.log" | xargs rm -f;\
rm -rf dist;\
rm -rf docs/_build
test:
tox
doc:
cd docs && make html
build-tool-contracts:
python -m pbcommand.cli.examples.dev_app --emit-tool-contract > ./tests/data/dev_example_tool_contract.json
python -m pbcommand.cli.examples.dev_txt_app --emit-tool-contract > ./tests/data/dev_example_dev_txt_app_tool_contract.json
python -m pbcommand.cli.examples.dev_gather_fasta_app --emit-tool-contract > ./tests/data/dev_gather_fasta_app_tool_contract.json
python -m pbcommand.cli.examples.dev_scatter_fasta_app --emit-tool-contract > ./tests/data/dev_scatter_fasta_app_tool_contract.json
python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contracts -o ./tests/data
run-pep8:
find pbcommand -name "*.py" -exec pep8 --ignore=E501,E265,E731,E402 {} \;
run-auto-pep8:
find pbcommand -name "*.py" -exec autopep8 -i --ignore=E501,E265,E731,E402 {} \;
build-java-classes:
avro-tools compile schema pbcommand/schemas java-classes/
extract-readme-snippets:
rm -rf readme-snippet-*.py
pandoc -t markdown README.md | pandoc --filter ./extract-readme-snippets.py
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