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import logging
from base_utils import get_data_file
import pbcommand.testkit
log = logging.getLogger(__name__)
class TestRunDevApp(pbcommand.testkit.PbTestApp):
DRIVER_BASE = "python -m pbcommand.cli.examples.dev_app "
REQUIRES_PBCORE = True
INPUT_FILES = [get_data_file("example.fasta")]
TASK_OPTIONS = {"pbcommand.task_options.dev_read_length": 27}
class TestTxtDevApp(pbcommand.testkit.PbTestApp):
DRIVER_BASE = "python -m pbcommand.cli.examples.dev_txt_app "
# XXX using default args, so the emit/resolve drivers are automatic
REQUIRES_PBCORE = False
INPUT_FILES = [get_data_file("example.txt")]
TASK_OPTIONS = {"pbcommand.task_options.dev_max_nlines": 27}
RESOLVED_TASK_OPTIONS = {"pbcommand.task_options.dev_max_nlines": 27}
class TestQuickDevHelloWorld(pbcommand.testkit.PbTestApp):
"""Runs dev_qhello_world """
DRIVER_EMIT = "python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_qhello_world "
DRIVER_RESOLVE = "python -m pbcommand.cli.examples.dev_quick_hello_world run-rtc "
REQUIRES_PBCORE = False
INPUT_FILES = [get_data_file("example.txt")]
class TestQuickTxt(pbcommand.testkit.PbTestApp):
"""Runs dev_qhello_world """
DRIVER_EMIT = "python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_txt_hello "
DRIVER_RESOLVE = "python -m pbcommand.cli.examples.dev_quick_hello_world run-rtc "
REQUIRES_PBCORE = False
INPUT_FILES = [get_data_file("example.txt")]
class TestQuickCustomTxtCustomOuts(pbcommand.testkit.PbTestApp):
"""Runs dev_qhello_world """
DRIVER_EMIT = "python -m pbcommand.cli.examples.dev_quick_hello_world emit-tool-contract pbcommand.tasks.dev_txt_custom_outs "
DRIVER_RESOLVE = "python -m pbcommand.cli.examples.dev_quick_hello_world run-rtc "
REQUIRES_PBCORE = False
INPUT_FILES = [get_data_file("example.txt")]
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