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Source: python-pbcommand
Section: python
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Afif Elghraoui <afif@debian.org>
Build-Depends:
debhelper (>= 9),
dh-python,
python-all,
python-setuptools,
python-xmlbuilder,
python-jsonschema,
python-avro,
python-numpy,
python-requests,
python-iso8601,
# For tests
python-nose,
python-pbcore
Standards-Version: 3.9.8
Homepage: https://pbcommand.readthedocs.org/en/latest/
Vcs-Git: https://anonscm.debian.org/git/debian-med/python-pbcommand.git
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/python-pbcommand.git
Package: python-pbcommand
Architecture: all
Depends: ${misc:Depends},
${python:Depends},
python-numpy
Recommends: python-pbcore
Description: common command-line interface for Pacific Biosciences analysis modules
To integrate with the pbsmrtpipe workflow engine, one must to be able to
generate a Tool Contract and to be able to run from a Resolved Tool Contract.
A Tool Contract contains the metadata of the exe, such as the file types of
inputs, outputs and options.
There are two principal use cases, first wrapping/calling Python functions that
have been defined in external Python packages, or scripts. Second, creating a
CLI tool that supports emitting tool contracts, running resolved tool contracts
and complete argparse-style CLI.
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