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Source: python-pbcommand
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: python
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-sequence-python3,
python3-all,
python3-setuptools,
python3-jsonschema,
python3-avro,
python3-numpy,
python3-requests,
python3-iso8601,
python3-pytest <!nocheck>,
python3-pytest-cov <!nocheck>,
python3-pytest-xdist <!nocheck>,
python3-pbcore <!nocheck>,
python3-pytz <!nocheck>
Standards-Version: 4.7.0
Vcs-Browser: https://salsa.debian.org/med-team/python-pbcommand
Vcs-Git: https://salsa.debian.org/med-team/python-pbcommand.git
Homepage: https://pbcommand.readthedocs.org/en/latest/
Rules-Requires-Root: no
Package: python3-pbcommand
Architecture: all
Depends: ${misc:Depends},
${python3:Depends},
python3-avro,
python3-numpy
Recommends: python3-pbcore
Description: common command-line interface for Pacific Biosciences analysis modules
To integrate with the pbsmrtpipe workflow engine, one must to be able to
generate a Tool Contract and to be able to run from a Resolved Tool Contract.
A Tool Contract contains the metadata of the exe, such as the file types of
inputs, outputs and options.
There are two principal use cases, first wrapping/calling Python functions that
have been defined in external Python 3 packages, or scripts. Second, creating a
CLI tool that supports emitting tool contracts, running resolved tool contracts
and complete argparse-style CLI.
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