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import logging
import pytest
import pbcommand
from pbcommand.models.common import (PacBioFloatChoiceOption, PacBioIntOption,
PacBioStringOption,
PacBioStringChoiceOption,
PacBioIntChoiceOption,
PacBioBooleanOption, PacBioFloatOption)
log = logging.getLogger(__name__)
def _to_i(s):
return "test.task_options.{}".format(s)
def get_or(i, value):
return value if i is None else i
class TestPacBioBasicOptionTest:
OPT_KLASS = PacBioIntOption
OPT_ID = "alpha"
OPT_NAME = "Alpha"
OPT_DESC = "Alpha description"
OPT_DEFAULT = 2
def _to_opt(self, i=None, n=None, v=None, d=None):
ix = get_or(i, _to_i(self.OPT_ID))
name = get_or(n, self.OPT_NAME)
value = get_or(v, self.OPT_DEFAULT)
description = get_or(d, self.OPT_DESC)
return self.OPT_KLASS(ix, name, value, description)
def test_sanity_option(self):
o = self._to_opt()
log.debug("Created option {o}".format(o=o))
assert o.option_id == "test.task_options.{}".format(self.OPT_ID)
assert o.name == self.OPT_NAME
assert o.default == self.OPT_DEFAULT
assert o.description == self.OPT_DESC
class TestPacBioIntOptionTest(TestPacBioBasicOptionTest):
def test_bad_value_string(self):
with pytest.raises(TypeError):
_ = self._to_opt(v="bad-string")
def test_bad_value_float(self):
with pytest.raises(TypeError):
_ = self._to_opt(v=3.124)
def test_bad_value_boolean(self):
with pytest.raises(TypeError):
_ = self._to_opt(v=True)
class TestPacBioBooleanOptionTest(TestPacBioBasicOptionTest):
OPT_KLASS = PacBioBooleanOption
OPT_DEFAULT = True
def test_bad_value_int(self):
with pytest.raises(TypeError):
_ = self._to_opt(v=1)
def test_bad_value_float(self):
with pytest.raises(TypeError):
_ = self._to_opt(v=1.10)
def test_bad_value_string(self):
with pytest.raises(TypeError):
_ = self._to_opt(v="bad-string")
class TestPacBioFloatOptionTest(TestPacBioBasicOptionTest):
OPT_KLASS = PacBioFloatOption
OPT_DEFAULT = 3.1415
def test_coerced_value_int(self):
o = self._to_opt(v=1)
assert o.default == 1.0
def test_bad_value_boolean(self):
with pytest.raises(TypeError):
_ = self._to_opt(v=True)
def test_bad_value_string(self):
with pytest.raises(TypeError):
_ = self._to_opt(v="bad-string")
def test_bad_value_float_tuple(self):
with pytest.raises(TypeError):
_ = self._to_opt(v=(1.0, 2.0))
class TestPacBioStringOptionTest(TestPacBioBasicOptionTest):
OPT_KLASS = PacBioStringOption
OPT_DEFAULT = "gamma"
def test_bad_value_int(self):
with pytest.raises(TypeError):
_ = self._to_opt(v=1)
def test_bad_value_float(self):
with pytest.raises(TypeError):
_ = self._to_opt(v=1.10)
class TestPacBioBasicChoiceTest(TestPacBioBasicOptionTest):
OPT_KLASS = PacBioStringChoiceOption
OPT_CHOICES = ("alpha", "beta", "gamma")
OPT_DEFAULT = "beta"
OPT_BAD_OPTION = "delta"
def _to_opt(self, i=None, n=None, v=None, d=None, c=None):
ix = get_or(i, _to_i(self.OPT_ID))
name = get_or(n, self.OPT_NAME)
value = get_or(v, self.OPT_DEFAULT)
description = get_or(d, self.OPT_DESC)
choices = get_or(c, self.OPT_CHOICES)
return self.OPT_KLASS(ix, name, value, description, choices)
def test_sanity_choice_option(self):
o = self._to_opt()
assert o.choices == self.OPT_CHOICES
def test_bad_invalid_choice(self):
with pytest.raises(ValueError):
_ = self._to_opt(v=self.OPT_BAD_OPTION)
class TestPacBioChoiceStringOptionTest(TestPacBioBasicChoiceTest):
OPT_KLASS = PacBioStringChoiceOption
OPT_DEFAULT = "gamma"
OPT_BAD_OPTION = "Bad-value"
class TestPacBioIntChoiceOptionTest(TestPacBioBasicChoiceTest):
OPT_KLASS = PacBioIntChoiceOption
OPT_CHOICES = (1, 2, 7)
OPT_DEFAULT = 2
OPT_BAD_OPTION = 3
class TestPacBioFloatChoiceOptionTest(TestPacBioBasicChoiceTest):
OPT_KLASS = PacBioFloatChoiceOption
OPT_CHOICES = (1.0, 2.0, 7.0)
OPT_DEFAULT = 2.0
OPT_BAD_OPTION = -1.0
def test_coerce_float_choices(self):
choices = (10, 12123, 12)
o = self._to_opt(c=choices, v=12)
def test_bad_choices(self):
choices = (1, 2.0, "bad-value")
with pytest.raises(TypeError):
_ = self._to_opt(c=choices)
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