File: subreadSetWithStats.xml

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<?xml version="1.0" ?>
<pbds:SubreadSet CreatedAt="2015-08-06T17:07:36" MetaType="PacBio.DataSet.SubreadSet" Name="" Tags="" TimeStampedName="PacBio.DataSet.SubreadSet-150807_000736" UniqueId="dd7edc7d-0c24-0823-f918-394d4cbd0f9d" Version="3.0.0" xmlns="http://pacificbiosciences.com/PacBioDataModel.xsd" xmlns:pbbase="http://pacificbiosciences.com/PacBioBaseDataModel.xsd" xmlns:pbds="http://pacificbiosciences.com/PacBioDatasets.xsd" xmlns:pbstats="http://pacificbiosciences.com/PipelineStats/PipeStats.xsd" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://pacificbiosciences.com/PacBioDataModel.xsd">
	<pbbase:ExternalResources>
		<pbbase:ExternalResource MetaType="PacBio.SubreadFile.SubreadBamFile" ResourceId="pbalchemysim0.subreads.bam" TimeStampedName="PacBio.SubreadFile.SubreadBamFile-150807_000736" UniqueId="c55c8ed2-4821-4c48-9395-94625363fe6d"/>
	</pbbase:ExternalResources>
	<pbds:DataSetMetadata>
		<pbds:TotalLength>-1</pbds:TotalLength>
		<pbds:NumRecords>-1</pbds:NumRecords>
		<pbstats:SummaryStats>
			<pbstats:NumSequencingZmws>153168.0</pbstats:NumSequencingZmws>
			<pbstats:AdapterDimerFraction>1.28301765719e-05</pbstats:AdapterDimerFraction>
			<pbstats:ShortInsertFraction>3.20754414298e-05</pbstats:ShortInsertFraction>
			<pbstats:ProdDist>
				<pbstats:NumBins>4</pbstats:NumBins>
				<pbstats:MetricDescription>Productivity</pbstats:MetricDescription>
				<pbstats:BinCounts>
					<pbstats:BinCount>120979</pbstats:BinCount>
					<pbstats:BinCount>25123</pbstats:BinCount>
					<pbstats:BinCount>7066</pbstats:BinCount>
					<pbstats:BinCount>0</pbstats:BinCount>
				</pbstats:BinCounts>
				<pbstats:BinLabels>
					<pbstats:BinLabel>Empty</pbstats:BinLabel>
					<pbstats:BinLabel>Productive</pbstats:BinLabel>
					<pbstats:BinLabel>Other</pbstats:BinLabel>
					<pbstats:BinLabel>NotDefined</pbstats:BinLabel>
				</pbstats:BinLabels>
			</pbstats:ProdDist>
			<pbstats:ReadTypeDist>
				<pbstats:NumBins>9</pbstats:NumBins>
				<pbstats:MetricDescription>Read Type</pbstats:MetricDescription>
				<pbstats:BinCounts>
					<pbstats:BinCount>89042</pbstats:BinCount>
					<pbstats:BinCount>14534</pbstats:BinCount>
					<pbstats:BinCount>199</pbstats:BinCount>
					<pbstats:BinCount>4367</pbstats:BinCount>
					<pbstats:BinCount>8126</pbstats:BinCount>
					<pbstats:BinCount>110</pbstats:BinCount>
					<pbstats:BinCount>0</pbstats:BinCount>
					<pbstats:BinCount>36790</pbstats:BinCount>
					<pbstats:BinCount>0</pbstats:BinCount>
				</pbstats:BinCounts>
				<pbstats:BinLabels>
					<pbstats:BinLabel>Empty</pbstats:BinLabel>
					<pbstats:BinLabel>FullHqRead0</pbstats:BinLabel>
					<pbstats:BinLabel>FullHqRead1</pbstats:BinLabel>
					<pbstats:BinLabel>PartialHqRead0</pbstats:BinLabel>
					<pbstats:BinLabel>PartialHqRead1</pbstats:BinLabel>
					<pbstats:BinLabel>PartialHqRead2</pbstats:BinLabel>
					<pbstats:BinLabel>Multiload</pbstats:BinLabel>
					<pbstats:BinLabel>Indeterminate</pbstats:BinLabel>
					<pbstats:BinLabel>NotDefined</pbstats:BinLabel>
				</pbstats:BinLabels>
			</pbstats:ReadTypeDist>
			<pbstats:ReadLenDist>
				<pbstats:SampleSize>901</pbstats:SampleSize>
				<pbstats:SampleMean>4528.69384765625</pbstats:SampleMean>
				<pbstats:SampleMed>5227</pbstats:SampleMed>
				<pbstats:SampleStd>2322.8055598026981</pbstats:SampleStd>
				<pbstats:Sample95thPct>7367</pbstats:Sample95thPct>
				<pbstats:NumBins>30</pbstats:NumBins>
				<pbstats:BinWidth>418.89999389648438</pbstats:BinWidth>
				<pbstats:MinOutlierValue>77</pbstats:MinOutlierValue>
				<pbstats:MinBinValue>77</pbstats:MinBinValue>
				<pbstats:MaxBinValue>12225.1025390625</pbstats:MaxBinValue>
				<pbstats:MaxOutlierValue>12644</pbstats:MaxOutlierValue>
				<pbstats:MetricDescription>Polymerase Read Length</pbstats:MetricDescription>
				<pbstats:BinCounts>
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					<pbstats:BinCount>62</pbstats:BinCount>
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			</pbstats:ReadLenDist>
			<pbstats:ReadQualDist>
				<pbstats:SampleSize>901</pbstats:SampleSize>
				<pbstats:SampleMean>0.82736450433731079</pbstats:SampleMean>
				<pbstats:SampleMed>0.83167940378189087</pbstats:SampleMed>
				<pbstats:SampleStd>0.029663275550147809</pbstats:SampleStd>
				<pbstats:Sample95thPct>0.86801999807357788</pbstats:Sample95thPct>
				<pbstats:NumBins>30</pbstats:NumBins>
				<pbstats:BinWidth>0.0049052196554839611</pbstats:BinWidth>
				<pbstats:MinOutlierValue>0.7500004768371582</pbstats:MinOutlierValue>
				<pbstats:MinBinValue>0.7500004768371582</pbstats:MinBinValue>
				<pbstats:MaxBinValue>0.89225196838378906</pbstats:MaxBinValue>
				<pbstats:MaxOutlierValue>0.89715707302093506</pbstats:MaxOutlierValue>
				<pbstats:MetricDescription>Polymerase Read Quality</pbstats:MetricDescription>
				<pbstats:BinCounts>
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				</pbstats:BinCounts>
			</pbstats:ReadQualDist>
			<pbstats:InsertReadLenDist>
				<pbstats:SampleSize>901</pbstats:SampleSize>
				<pbstats:SampleMean>460.4583740234375</pbstats:SampleMean>
				<pbstats:SampleMed>350</pbstats:SampleMed>
				<pbstats:SampleStd>592.13342124584449</pbstats:SampleStd>
				<pbstats:Sample95thPct>751</pbstats:Sample95thPct>
				<pbstats:NumBins>30</pbstats:NumBins>
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				<pbstats:MinBinValue>78</pbstats:MinBinValue>
				<pbstats:MaxBinValue>2920</pbstats:MaxBinValue>
				<pbstats:MaxOutlierValue>5969</pbstats:MaxOutlierValue>
				<pbstats:MetricDescription>Read Length of Insert</pbstats:MetricDescription>
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			</pbstats:InsertReadLenDist>
			<pbstats:InsertReadQualDist>
				<pbstats:SampleSize>901</pbstats:SampleSize>
				<pbstats:SampleMean>0.96519893407821655</pbstats:SampleMean>
				<pbstats:SampleMed>0.99638187885284424</pbstats:SampleMed>
				<pbstats:SampleStd>0.063829474832070937</pbstats:SampleStd>
				<pbstats:Sample95thPct>0.9987713098526001</pbstats:Sample95thPct>
				<pbstats:NumBins>30</pbstats:NumBins>
				<pbstats:BinWidth>0.0082235373556613922</pbstats:BinWidth>
				<pbstats:MinOutlierValue>0.75223779678344727</pbstats:MinOutlierValue>
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				<pbstats:MetricDescription>Median Insert</pbstats:MetricDescription>
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				<pbstats:MetricDescription>Polymerase Read Length</pbstats:MetricDescription>
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				<pbstats:MetricDescription>Polymerase Read Quality</pbstats:MetricDescription>
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				<pbstats:MetricDescription>Median Insert</pbstats:MetricDescription>
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						<pbstats:MetricDescription>Polymerase Read Quality</pbstats:MetricDescription>
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						<pbstats:MetricDescription>Read Length of Insert</pbstats:MetricDescription>
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						</pbstats:BinCounts>
					</pbstats:InsertReadLenDist>
					<pbstats:InsertReadQualDist>
						<pbstats:SampleSize>24222</pbstats:SampleSize>
						<pbstats:SampleMean>0.86046397686004639</pbstats:SampleMean>
						<pbstats:SampleMed>0.8684546947479248</pbstats:SampleMed>
						<pbstats:SampleStd>0.035067464845073885</pbstats:SampleStd>
						<pbstats:Sample95thPct>0.89117431640625</pbstats:Sample95thPct>
						<pbstats:NumBins>30</pbstats:NumBins>
						<pbstats:BinWidth>0.0082973875105381012</pbstats:BinWidth>
						<pbstats:MinOutlierValue>0.75007820129394531</pbstats:MinOutlierValue>
						<pbstats:MinBinValue>0.75007820129394531</pbstats:MinBinValue>
						<pbstats:MaxBinValue>0.99070233106613159</pbstats:MaxBinValue>
						<pbstats:MaxOutlierValue>0.998999834060669</pbstats:MaxOutlierValue>
						<pbstats:MetricDescription>Read Quality of Insert</pbstats:MetricDescription>
						<pbstats:BinCounts>
							<pbstats:BinCount>0</pbstats:BinCount>
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							<pbstats:BinCount>221</pbstats:BinCount>
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							<pbstats:BinCount>1989</pbstats:BinCount>
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							<pbstats:BinCount>247</pbstats:BinCount>
							<pbstats:BinCount>1</pbstats:BinCount>
						</pbstats:BinCounts>
					</pbstats:InsertReadQualDist>
					<pbstats:MedianInsertDist>
						<pbstats:SampleSize>570</pbstats:SampleSize>
						<pbstats:SampleMean>5406.65625</pbstats:SampleMean>
						<pbstats:SampleMed>2860</pbstats:SampleMed>
						<pbstats:SampleStd>6322.1968204214045</pbstats:SampleStd>
						<pbstats:Sample95thPct>18508</pbstats:Sample95thPct>
						<pbstats:NumBins>30</pbstats:NumBins>
						<pbstats:BinWidth>1090.199951171875</pbstats:BinWidth>
						<pbstats:MinOutlierValue>0</pbstats:MinOutlierValue>
						<pbstats:MinBinValue>0</pbstats:MinBinValue>
						<pbstats:MaxBinValue>31615.791015625</pbstats:MaxBinValue>
						<pbstats:MaxOutlierValue>64092</pbstats:MaxOutlierValue>
						<pbstats:MetricDescription>Median Insert</pbstats:MetricDescription>
						<pbstats:BinCounts>
							<pbstats:BinCount>0</pbstats:BinCount>
							<pbstats:BinCount>28</pbstats:BinCount>
							<pbstats:BinCount>159</pbstats:BinCount>
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							<pbstats:BinCount>2</pbstats:BinCount>
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						</pbstats:BinCounts>
					</pbstats:MedianInsertDist>
				</pbstats:SummaryStats>
			</pbds:DataSetMetadata>
		</SubreadSet>
	</DataSets>
</pbds:SubreadSet>