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from nose.tools import assert_equal, assert_true, assert_false
from numpy.testing import assert_array_equal
from StringIO import StringIO
from os.path import isabs
from pbcore import data
from pbcore.io import readFofn
def test_simple():
fofn = StringIO("/a/b\n/c/d")
lst = list(readFofn(fofn))
assert_array_equal(["/a/b", "/c/d"], lst)
def test_empty_lines():
fofn = StringIO("/a/b\n \n/c/d\n ")
lst = list(readFofn(fofn))
assert_array_equal(["/a/b", "/c/d"], lst)
def test_absolutifying():
for fofnPath in data.getFofns():
for filePath in readFofn(fofnPath):
assert_true(isabs(filePath))
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