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.PHONY: clean doc doc-clean tests check test install build bdist gh-pages
build:
python setup.py build
bdist:
python setup.py build --executable="/usr/bin/env python"
python setup.py bdist --formats=egg
install:
@which pip > /dev/null
@pip freeze|grep 'pbcore=='>/dev/null \
&& pip uninstall -y pbcore \
|| echo -n ''
@pip install ./
pylint:
pylint --errors-only --enable=C0411,W0702,W0401,W0611 pbcore/
autopep8:
find pbcore -name "*.py" | xargs autopep8 -i
find tests -name "*.py" | xargs autopep8 -i
clean: doc-clean
rm -rf build/;\
find . -name "*.egg-info" | xargs rm -rf;\
rm -rf dist/;\
find . -name "*.pyc" | xargs rm -f;
rm -f nosetests.xml
doc:
sphinx-apidoc -o doc/ pbcore/ && cd doc/ && make html
doc-clean:
cd doc && rm -rf _templates _static _build searchindex.js objects.inv
doctest:
cd doc && make doctest
unit-test:
pytest
sed -i -e 's@filename="@filename="./@g' coverage.xml
test: doctest unit-test
tests: test
check: test
GH_PAGES_SOURCES = pbcore doc
gh-pages:
git checkout gh-pages
rm -rf _static _sources *.js *.html *.inv
git checkout master $(GH_PAGES_SOURCES)
cd doc && make html
mv -fv doc/_build/html/* .
rm -rf $(GH_PAGES_SOURCES)
git add --all && git commit -m "Automatic update of gh-pages branch" && git checkout master
pip-install:
@which pip > /dev/null
@pip freeze|grep 'pbcore=='>/dev/null \
&& pip uninstall -y pbcore \
|| echo -n ''
@pip install --no-index ./
publish-to-pypi:
@echo "I'm not going to do this for you, but you can do it by:"
@echo " % python setup.py sdist upload -r pypi"
validate-metadata:
xmllint --schema ../xsd-datamodels/PacBioCollectionMetadata.xsd pbcore/data/datasets/CollectionMetadata.xml
wheel:
which pip
pip wheel --wheel-dir=${WHEELHOUSE} --no-deps .
ls -larth ${WHEELHOUSE}
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