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.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.47.11.
.TH GENBANK_GET_GENOMES_BY_TAXON.PY "1" "November 2019" "genbank_get_genomes_by_taxon.py 0.2.9" "User Commands"
.SH NAME
genbank_get_genomes_by_taxon.py \- genbank get genomes by taxon
.SH SYNOPSIS
.B genbank_get_genomes_by_taxon.py
[\-h] \fB\-o\fR OUTDIRNAME [\-t TAXON] [\-v] [\-f]
[\-\-noclobber] [\-l LOGFILE]
[\-\-format FORMAT] \fB\-\-email\fR EMAIL
[\-\-retries RETRIES]
[\-\-batchsize BATCHSIZE]
[\-\-timeout TIMEOUT]
.SH OPTIONS
.SS "optional arguments:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-o\fR OUTDIRNAME, \fB\-\-outdir\fR OUTDIRNAME
Output directory (required)
.TP
\fB\-t\fR TAXON, \fB\-\-taxon\fR TAXON
NCBI taxonomy ID
.TP
\fB\-v\fR, \fB\-\-verbose\fR
Give verbose output
.TP
\fB\-f\fR, \fB\-\-force\fR
Force file overwriting
.TP
\fB\-\-noclobber\fR
Don't nuke existing files
.TP
\fB\-l\fR LOGFILE, \fB\-\-logfile\fR LOGFILE
Logfile location
.TP
\fB\-\-format\fR FORMAT
Output file format [gbk|fasta]
.TP
\fB\-\-email\fR EMAIL
Email associated with NCBI queries (required)
.TP
\fB\-\-retries\fR RETRIES
Number of Entrez retry attempts per request.
.TP
\fB\-\-batchsize\fR BATCHSIZE
Entrez record return batch size
.TP
\fB\-\-timeout\fR TIMEOUT
Timeout for URL connection (s)
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and
can be used for any other usage of the program.
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