File: test.delta

package info (click to toggle)
python-pyani 0.2.13-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 159,944 kB
  • sloc: python: 3,106; makefile: 86; sh: 30
file content (465 lines) | stat: -rw-r--r-- 4,601 bytes parent folder | download | duplicates (6)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
/Users/lpritc/Development/GitHub/scripts/bioinformatics/test_ani_data/NC_002696.fna /Users/lpritc/Development/GitHub/scripts/bioinformatics/test_ani_data/NC_011916.fna
NUCMER
>gi|16124256|ref|NC_002696.2| gi|221232939|ref|NC_011916.1| 4016947 4042929
1 473068 1 473068 6 6 0
-48813
8050
-105282
12
0
82646 82870 3662319 3662095 50 50 0
-26
7
123
-4
0
150943 151049 3969949 3969843 0 0 0
0
437382 437615 3822400 3822167 23 23 0
-132
6
-26
5
0
437500 438017 2410776 2410258 52 52 0
-187
5
-128
89
-31
0
444818 445200 1305087 1304705 21 21 0
-374
4
0
473048 1056653 499078 1082684 6 6 0
-351052
0
480569 480687 3144071 3143953 4 4 0
0
539418 539541 980769 980646 2 2 0
0
556340 556893 3060141 3059588 73 73 0
-371
3
0
578005 578127 1176502 1176380 2 2 0
0
691716 693231 2971590 2970075 0 0 0
0
725236 725346 3086633 3086523 1 1 0
0
786446 786568 1178875 1178749 8 8 0
-51
-1
-1
-1
0
871429 871557 3053172 3053043 4 4 0
-122
0
933038 933156 1463230 1463112 2 2 0
0
954615 954738 565571 565448 2 2 0
0
1031294 1032153 3605326 3604466 1 1 0
-857
0
1056504 1056653 3356851 3356702 0 0 0
0
1056654 1056748 3356755 3356661 0 0 0
0
1056654 3740236 1082631 3766218 78 78 0
212012
-388164
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
-1
164
1
1
1
1
1
1
1
1
1
1
1
-746007
-1
-1
-1
-52410
-182700
123457
5186
237862
-37815
-82061
-70827
-1
-1
-1
-88247
-108858
-1
-1
-246323
-48967
42524
1
1
1
1
1
1
1
1
0
1150402 1150518 1394749 1394633 2 2 0
0
1150403 1150525 604157 604035 2 2 0
0
1152772 1152898 812598 812476 8 8 0
74
1
1
1
0
1260607 1261810 2638964 2637761 18 18 0
0
1278729 1279111 445200 444818 21 21 0
-7
4
0
1368657 1368773 1176495 1176379 2 2 0
0
1368766 1369629 1419249 1418386 1 1 0
0
1392339 1392418 3142874 3142795 2 2 0
0
1392410 1393273 1395605 1394742 1 1 0
0
1397507 1398702 3480875 3479680 1 1 0
0
1420451 1420784 1682705 1682374 31 31 0
20
159
1
-6
7
-5
76
19
-8
-4
0
1420418 1420835 2410670 2410251 50 50 0
305
19
-8
-4
-11
-69
0
1420434 1420838 3615969 3615567 46 46 0
-24
45
133
11
-118
71
0
1437136 1437254 959187 959069 2 2 0
0
1450078 1450891 2497829 2497016 159 159 0
-317
6
-91
7
53
-3
-65
-6
7
1
183
-4
15
-9
0
1656398 1656729 1446760 1446427 31 31 0
31
6
-8
-20
76
-4
-5
-168
0
1890076 1890525 2203186 2202735 50 50 0
20
1
-6
-1
-231
7
-12
-95
-10
15
0
1890139 1890280 1950252 1950111 7 7 0
0
1890133 1890520 3615977 3615588 52 52 0
-32
45
-218
-30
39
1
-5
-1
0
1924135 1924276 1916256 1916115 7 7 0
0
1927340 1928730 2936026 2934636 106 106 0
747
-5
0
2176759 2177210 1916501 1916052 50 50 0
-59
15
4
98
-15
7
231
1
-6
-1
0
2302017 2302227 3616652 3616441 4 4 0
-206
0
2302797 2302936 3020761 3020625 16 16 0
-49
15
1
1
1
0
2384282 2384800 438017 437500 52 52 0
78
-34
90
-128
5
0
2384275 2384694 1446811 1446394 50 50 0
7
67
10
6
-8
-20
0
2384282 2384691 3983604 3983198 39 39 0
-79
7
102
19
-123
5
11
0
2469228 2469362 2995521 2995386 18 18 0
18
7
8
-38
-1
-1
-1
0
2471035 2471848 1476867 1476054 159 159 0
53
-10
16
-3
-183
-1
8
2
67
-5
-48
12
-91
5
0
2492748 2494014 2983461 2982195 0 0 0
0
2580508 2581333 475080 474254 97 97 0
-727
0
2583084 2583913 475080 474250 96 96 0
-727
0
2611780 2612983 1287787 1286584 18 18 0
0
2873916 2875431 2971588 2970073 0 0 0
0
2908656 2910046 1954706 1953316 106 106 0
641
-5
0
2944093 2945608 2901411 2899896 0 0 0
0
2944095 2945610 719261 717746 0 0 0
0
2956215 2957481 2519995 2518729 0 0 0
0
2969406 2969541 2495343 2495209 18 18 0
66
1
1
1
-37
-7
-8
0
2994645 2994781 2328912 2328773 16 16 0
-75
-1
-1
-1
14
0
3014056 3014294 3356838 3356600 21 21 0
0
3027064 3027193 897588 897460 4 4 0
8
0
3033609 3034162 582923 582370 73 73 0
-178
7
0
3060542 3060655 3256990 3256876 1 1 0
-97
0
3060543 3060653 751376 751266 1 1 0
0
3087352 3087497 3150520 3150375 16 16 0
0
3106181 3106540 3744430 3744071 74 74 0
44
-3
94
-8
-102
5
58
1
3
-7
-1
-5
0
3116815 3116894 1418394 1418315 2 2 0
0
3117973 3118091 506717 506599 4 4 0
0
3124395 3124539 3113477 3113332 17 17 0
-103
0
3230891 3231005 3086635 3086522 1 1 0
18
0
3330675 3330865 1082725 1082535 0 0 0
0
3453691 3454886 1424678 1423483 1 1 0
0
3578477 3579337 1058184 1057325 1 1 0
5
0
3589578 3589980 1446814 1446410 46 46 0
-6
67
-119
-14
-132
44
0
3589599 3589988 1916496 1916109 52 52 0
23
1
-4
-1
38
31
-218
44
0
3590452 3590663 2328203 2327993 4 4 0
5
0
3636106 3636330 82870 82646 50 50 0
66
-6
-123
3
0
3718080 3718439 3132520 3132161 74 74 0
36
3
1
-8
-1
-4
-57
5
103
-8
88
-9
0
3720234 4016947 3746225 4042929 14 14 0
9991
1
1
1
1
1
1
1
1
0
3796185 3796418 437615 437382 23 23 0
-68
4
-27
6
0
3943861 3943967 151049 150943 0 0 0
0
3957216 3957622 2410667 2410258 39 39 0
-62
-16
5
-123
-19
-102
7
0