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FROM ubuntu:14.04
MAINTAINER Ryan Dale <dalerr@niddk.nih.gov>
RUN apt-get update && apt-get install -y \
build-essential \
bzip2 \
ca-certificates \
git \
libglib2.0-0 \
libsm6 \
libxext6 \
libxrender1 \
mysql-client \
wget \
zlib1g-dev
RUN echo 'export PATH=/opt/conda/bin:$PATH' > /etc/profile.d/conda.sh && \
wget --quiet https://repo.continuum.io/miniconda/Miniconda3-3.10.1-Linux-x86_64.sh && \
/bin/bash /Miniconda3-3.10.1-Linux-x86_64.sh -b -p /opt/conda && \
rm Miniconda3-3.10.1-Linux-x86_64.sh && \
/opt/conda/bin/conda install --yes conda==3.14.1
ENV PATH /opt/conda/bin:$PATH
RUN conda install -c daler \
pip \
cython \
matplotlib \
nose \
numpydoc \
pip \
pandas \
pyyaml \
sphinx \
pysam
RUN conda install -c daler \
tabix \
bedtools=2.25.0
ENV DISPLAY=:0
ENV LANG C.UTF-8
WORKDIR /opt/pybedtools
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