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.. currentmodule:: pybedtools
.. _Tabix: http://samtools.sourceforge.net/tabix.shtml
.. _download page: http://sourceforge.net/projects/samtools/files/
.. _samtools: http://samtools.sourceforge.net/
.. _tempdir: http://docs.python.org/library/tempfile.html#tempfile.tempdir
.. _filo: https://github.com/arq5x/filo
.. _R: http://www.r-project.org/
.. _BEDTools: http://github.com/arq5x/bedtools
.. _BEDTools documentation: http://code.google.com/p/bedtools/#Documentation
.. _Learn Python the Hard Way: http://learnpythonthehardway.org/static/LearnPythonTheHardWay.pdf
.. _IPython: http://ipython.scipy.org/moin/
.. _BED format: http://genome.ucsc.edu/FAQ/FAQformat#format1
.. _pip: http://www.pip-installer.org/en/latest/installing.html
.. _easy_install: http://pypi.python.org/pypi/setuptools
.. _Python Package Index: http://pypi.python.org/pypi
.. _Cython: http://cython.org/
.. _Python: http://www.python.org/
.. _nosetests: http://somethingaboutorange.com/mrl/projects/nose/
.. _PyYAML: http://pyyaml.org/wiki/PyYAMLDocumentation
.. _Sphinx: http://sphinx.pocoo.org/
.. _Cygwin: http://www.cygwin.com
.. _argparse: http://pypi.python.org/pypi/argparse
.. _nose: http://pypi.python.org/pypi/nose
.. _scipy: http://www.scipy.org/
.. _matplotlib: http://matplotlib.sourceforge.net/
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