File: test_merge215.yaml

package info (click to toggle)
python-pybedtools 0.8.0-5
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 16,140 kB
  • sloc: python: 9,589; cpp: 899; makefile: 149; sh: 116
file content (27 lines) | stat: -rw-r--r-- 623 bytes parent folder | download | duplicates (4)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
# each test will be expanded into 6 tests, to check stream, file, and generator
# versions of input and output BedTools


#88888888888888888888888888888888888888888888888888888888888888888888888888888
# merge - as functional up to 2.26
#
-   method: merge
    kwargs:
        i: a.bed
        s: True
        c: [4, 5, 6]
        o: 'distinct'
    expected: |
        chr1	1	200	+	feature1,feature2	0	+
        chr1	150	500	-	feature3	0	-
        chr1	900	950	+	feature4	0	+

-   method: merge
    kwargs:
        i: a.bed
        s: True
    expected: |
        chr1	1	200	+
        chr1	150	500	-
        chr1	900	950	+