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import os
import pytest
from pathlib import Path
from pyfaidx import Faidx, Fasta
path = os.path.dirname(__file__)
os.chdir(path)
@pytest.fixture
def remove_index():
yield
try:
os.remove('data/genes.fasta.fai')
except EnvironmentError:
pass # some tests may delete this file
def test_Faidx(remove_index):
""" Ensures that Faidx can be created with a pathlib.Path as filename """
filename = 'data/genes.fasta'
faidx = Faidx(filename)
faidx_w_path = Faidx(Path(filename))
assert faidx.filename == faidx_w_path.filename
def test_Fasta(remove_index):
""" Ensures that Fasta can be created with a pathlib.Path as filename """
filename = 'data/genes.fasta'
fasta = Fasta(filename)
fasta_w_path = Fasta(Path(filename))
assert fasta.filename == fasta_w_path.filename
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