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import pytest
import unittest
import pygraphviz as pgv
stringify = pgv.testing.stringify
class TestGraph(unittest.TestCase):
def setUp(self):
self.null = pgv.AGraph()
self.K1 = pgv.AGraph()
self.K1.add_node(1)
self.K3 = pgv.AGraph()
self.K3.add_edges_from([(1, 2), (1, 3), (2, 3)])
self.K5 = pgv.AGraph()
self.K5.add_edges_from(
[
(1, 2),
(1, 3),
(1, 4),
(1, 5),
(2, 3),
(2, 4),
(2, 5),
(3, 4),
(3, 5),
(4, 5),
]
)
self.P3 = pgv.AGraph()
self.P3.add_path([1, 2, 3])
self.P5 = pgv.AGraph()
self.P5.add_path([1, 2, 3, 4, 5])
def test_strict(self):
A = pgv.AGraph() # empty
assert A.is_strict()
assert A.nodes() == []
def test_data(self):
d = {"a": "b", "b": "c"}
A = pgv.AGraph(data=d) # with data
assert sorted(A.nodes()) == ["a", "b", "c"]
assert sorted(A.edges()) == [("a", "b"), ("b", "c")]
def test_str(self):
A = pgv.AGraph(name="test")
assert stringify(A) == "strict graph test { }"
A = pgv.AGraph()
assert stringify(A) == "strict graph { }"
def test_repr(self):
A = pgv.AGraph()
assert repr(A).startswith("<AGraph <Swig Object of type 'Agraph_t")
# If graph has a name, it should show up in the repr
A = pgv.AGraph(name="foo")
assert "foo" in repr(A)
def test_equal(self):
A = pgv.AGraph()
H = pgv.AGraph()
assert H == A
assert H is not A
assert self.P3 == self.P3
A = pgv.AGraph()
A.add_path([1, 2, 3])
assert A.nodes() == self.P3.nodes()
assert A.edges() == self.P3.edges()
assert stringify(A) == stringify(self.P3)
assert A == self.P3
def test_not_equal(self):
A = pgv.AGraph()
A.add_path([1, 2, 3])
B = self.P3
assert A == B
A.add_node(4)
assert A != B
A.remove_node(4)
assert A == B
A.add_edge(3, 1)
assert A != B
A.remove_edge(3, 1)
assert A == B
A.add_node(4, hi=9)
assert A != B
A.remove_node(4)
assert A != B # attribute 'hi' exists for every node.
B.node_attr["hi"] = ""
assert A == B
A.add_edge(3, 1, hi=9)
assert A != B
A.remove_edge(3, 1)
assert A != B
B.edge_attr["hi"] = ""
assert A == B
# Note: adding node attr gives every node that attribute but empty.
# Default values are only assigned to nodes added after default is set.
A.node_attr["low"] = 3
assert A != B
B.node_attr["low"] = 3
assert A == B
B.node_attr["low"] = 4
assert A == B
A.edge_attr["low"] = 3
assert A != B
B.edge_attr["low"] = 3
assert A == B
B.edge_attr["low"] = 4
assert A == B
# graph_attr are not default values -- they are attribute values.
A.graph_attr.update({"low": 5})
assert A == B
# print(sorted(A.nodes()), sorted(B.nodes()))
# print(sorted(A.edges()), sorted(B.edges()))
# print(tuple(dict(n.attr) for n in sorted(A.nodes())))
# print(tuple(dict(n.attr) for n in sorted(B.nodes())))
# print(tuple(dict(e.attr) for e in sorted(A.edges())))
# print(tuple(dict(e.attr) for e in sorted(B.edges())))
# print(dict(A.node_attr), dict(B.node_attr))
# print(dict(A.edge_attr), dict(B.edge_attr))
# print(dict(A.graph_attr), dict(B.graph_attr))
def test_hash(self):
A = pgv.AGraph()
A.add_path([1, 2, 3])
assert hash(A) == hash(self.P3)
B = A.copy()
assert hash(A) == hash(B)
B.add_node(4)
assert hash(A) != hash(B)
def test_iter(self):
assert sorted(self.P3.__iter__()) == ["1", "2", "3"]
assert sorted(self.P3) == ["1", "2", "3"]
def test_contains(self):
assert "1" in self.P3
assert 10 not in self.P3
def test_len(self):
assert len(self.P3) == 3
def test_getitem(self):
assert self.P3[1] == ["2"]
def test_missing_getitem(self):
with pytest.raises(KeyError):
a = self.P3[10]
def test_add_remove_node(self):
A = pgv.AGraph()
A.add_node(1)
assert A.nodes() == ["1"]
A.add_node("A")
assert sorted(A.nodes()) == ["1", "A"]
A.add_node([1]) # nodes must be strings or have a __str__
assert sorted(A.nodes()) == ["1", "A", "[1]"]
A.remove_node([1])
assert sorted(A.nodes()) == ["1", "A"]
A.remove_node("A")
assert A.nodes() == ["1"]
A.remove_node(1)
assert A.nodes() == []
with pytest.raises(KeyError):
A.remove_node(1)
def test_add_remove_nodes_from(self):
A = pgv.AGraph()
A.add_nodes_from(range(3))
assert sorted(A.nodes()) == ["0", "1", "2"]
A.remove_nodes_from(range(3))
assert A.nodes() == []
with pytest.raises(KeyError):
A.remove_nodes_from(range(3))
def test_nodes(self):
assert sorted(self.P3.nodes()) == ["1", "2", "3"]
assert sorted(self.P3.nodes_iter()) == ["1", "2", "3"]
assert sorted(self.P3.iternodes()) == ["1", "2", "3"]
def test_order(self):
assert self.P3.number_of_nodes() == 3
assert self.P3.order() == 3
def test_has_node(self):
assert self.P3.has_node(1)
assert self.P3.has_node("1")
assert not self.P3.has_node("10")
def test_get_node(self):
assert self.P3.get_node(1) == "1"
one = self.P3.get_node(1)
nh = one.get_handle()
node = pgv.Node(self.P3, 1)
assert node.get_handle() == nh
assert node == "1"
with pytest.raises(KeyError):
pgv.Node(self.P3, 10)
def test_add_edge(self):
A = pgv.AGraph()
A.add_edge(1, 2)
assert sorted(A.edges()) == [("1", "2")]
e = (2, 3)
A.add_edge(e)
edges = [("1", "2"), ("2", "3")]
assert sorted(tuple(sorted(e)) for e in A.edges()) == edges
def test_add_remove_edges_from(self):
A = pgv.AGraph()
A.add_edges_from([(1, 2), (2, 3)])
edges = [("1", "2"), ("2", "3")]
assert sorted(tuple(sorted(e)) for e in A.edges()) == edges
A.remove_edge(1, 2)
assert sorted(A.edges()) == [("2", "3")]
e = (2, 3)
A.remove_edge(e)
assert A.edges() == []
with pytest.raises(KeyError):
A.remove_edge(1, 2)
def test_remove_edges_from(self):
A = pgv.AGraph()
A.add_edges_from([(1, 2), (2, 3)])
edges = [("1", "2"), ("2", "3")]
assert sorted(tuple(sorted(e)) for e in A.edges()) == edges
A.remove_edges_from([(1, 2), (2, 3)])
assert A.edges() == []
def test_edges(self):
A = pgv.AGraph()
A.add_edges_from([(1, 2), (2, 3)])
edges = [("1", "2"), ("2", "3")]
assert sorted(tuple(sorted(e)) for e in A.edges()) == edges
assert sorted(tuple(sorted(e)) for e in A.edges_iter()) == edges
assert sorted(tuple(sorted(e)) for e in A.iteredges()) == edges
def test_has_edge(self):
assert self.P3.has_edge(1, 2)
assert self.P3.has_edge("1", "2")
assert not self.P3.has_edge("1", "10")
assert self.P3.get_edge(1, 2) == ("1", "2")
eone = self.P3.get_edge(1, 2)
eh = eone.handle
edge = pgv.Edge(self.P3, 1, 2)
assert edge.handle == eh
assert edge == ("1", "2")
A = self.P3.copy()
A.add_node(10)
with pytest.raises(KeyError):
pgv.Edge(A, 1, 10)
def test_neighbors(self):
A = pgv.AGraph()
A.add_edges_from([(1, 2), (2, 3)])
assert sorted(A.neighbors(2)) == ["1", "3"]
assert sorted(A.neighbors_iter(2)) == ["1", "3"]
assert sorted(A.iterneighbors(2)) == ["1", "3"]
def test_degree(self):
A = pgv.AGraph()
A.add_edges_from([(1, 2), (2, 3)])
assert sorted(A.degree()) == [1, 1, 2]
assert sorted(A.degree_iter()) == [("1", 1), ("2", 2), ("3", 1)]
assert sorted(A.iterdegree()) == [("1", 1), ("2", 2), ("3", 1)]
assert sorted(A.iterdegree(A.nodes())) == [("1", 1), ("2", 2), ("3", 1)]
assert sorted(A.iterdegree(A)) == [("1", 1), ("2", 2), ("3", 1)]
assert A.degree(1) == 1
assert A.degree(2) == 2
def test_clear(self):
A = pgv.AGraph()
A.add_edges_from([(1, 2), (2, 3)])
A.clear()
assert A.nodes() == []
assert A.edges() == []
def test_copy(self):
A = self.P3.copy()
assert A.nodes() == ["1", "2", "3"]
assert A.edges() == [("1", "2"), ("2", "3")]
assert A is not self.P3
assert self.P3 is self.P3
assert stringify(A) == stringify(self.P3)
assert A == self.P3
# see Github Issue #354: G.copy() doesn't return a faithful copy
DG = pgv.AGraph(directed=True)
DG.add_edge(1, 2)
DG_copy = DG.copy()
assert DG_copy.is_directed()
G = pgv.AGraph()
G.add_edge(1, 2)
G_copy = G.copy()
assert not G_copy.is_directed()
# Similarly with the strict and name attrs when copying: see gh-426
A = pgv.AGraph(strict=False, directed=True, name="foobar")
AC = A.copy()
assert AC.strict == A.strict
assert AC.name == A.name
def test_multigraph_copy_with_keys(self):
A = pgv.AGraph(strict=False)
# Add parallel edges
A.add_edge(1, 2, key="1_2-1")
A.add_edge(1, 2, key="1_2-2")
# Add single edge
A.add_edge(3, 4, key="3_4-1")
AC = A.copy()
# Sanity - verify keys exist in original graph
assert all(key is not None for key in A.edges(keys=True))
# Verify all edges in copied graph have edges
assert all(key is not None for key in AC.edges(keys=True))
# Verify edges, including keys, are identical to original graph
assert set(A.edges(keys=True)) == set(AC.edges(keys=True))
def test_add_path(self):
A = pgv.AGraph()
A.add_path([1, 2, 3])
assert A == self.P3
def test_add_cycle(self):
A = pgv.AGraph()
A.add_cycle([1, 2, 3])
assert A.nodes() == ["1", "2", "3"]
edges = [("1", "2"), ("1", "3"), ("2", "3")]
assert sorted(tuple(sorted(e)) for e in A.iteredges()) == edges
def test_graph_strict(self):
A = pgv.AGraph()
A.add_node(1)
A.add_node(1) # silent falure
assert A.nodes() == ["1"]
A.add_edge(1, 2)
A.add_edge(1, 2) # silent falure
assert A.edges() == [("1", "2")]
A.add_edge(3, 3) # self-loops OK with strict
assert A.edges() == [("1", "2"), ("3", "3")]
assert A.nodes() == ["1", "2", "3"]
def test_graph_not_strict(self):
A = pgv.AGraph(strict=False)
assert not A.is_strict()
A.add_node(1)
A.add_node(1) # nop
assert A.nodes() == ["1"]
A.add_edge(1, 2)
A.add_edge(1, 2)
assert A.edges() == [("1", "2"), ("1", "2")]
A.add_edge(3, 3)
assert A.edges() == [("1", "2"), ("1", "2"), ("3", "3")]
assert A.nodes() == ["1", "2", "3"]
A.add_edge("3", "3", "foo")
assert A.edges() == [("1", "2"), ("1", "2"), ("3", "3"), ("3", "3")]
ans = [("1", "2", None), ("1", "2", None), ("3", "3", None), ("3", "3", "foo")]
assert A.edges(keys=True) == ans
eone = A.get_edge(3, 3, "foo")
eh = eone.handle
edge = pgv.Edge(A, 3, 3, "foo")
assert edge.handle == eh
assert edge == ("3", "3")
assert eone == ("3", "3")
assert edge.name == "foo"
class TestDiGraphOnly(TestGraph):
def test_edge(self):
A = pgv.AGraph(directed=True)
A.add_edge(1, 2)
assert A.has_edge(1, 2)
assert not A.has_edge(2, 1)
A.add_edge(2, 1)
assert A.has_edge(2, 1)
def test_edges(self):
A = pgv.AGraph(directed=True)
A.add_edges_from(self.P3.edges())
edges = [("1", "2"), ("2", "3")]
assert sorted(tuple(sorted(e)) for e in A.edges()) == edges
assert sorted(tuple(sorted(e)) for e in A.edges_iter()) == edges
assert sorted(tuple(sorted(e)) for e in A.out_edges()) == edges
assert sorted(tuple(sorted(e)) for e in A.out_edges_iter()) == edges
assert sorted(tuple(sorted(e)) for e in A.in_edges()) == edges
assert sorted(tuple(sorted(e)) for e in A.in_edges_iter()) == edges
assert sorted(A.edges(1)) == [("1", "2")]
assert sorted(A.edges([1, 2])) == [("1", "2"), ("2", "3")]
assert sorted(A.edges_iter(1)) == [("1", "2")]
assert sorted(A.out_edges(1)) == [("1", "2")]
assert sorted(A.out_edges([1, 2])) == [("1", "2"), ("2", "3")]
assert sorted(A.out_edges_iter(1)) == [("1", "2")]
assert sorted(A.in_edges(2)) == [("1", "2")]
assert sorted(A.in_edges([1, 2])) == [("1", "2")]
assert sorted(A.in_edges_iter(2)) == [("1", "2")]
assert A.predecessors(1) == []
assert list(A.predecessors_iter(1)) == []
assert A.predecessors(2) == ["1"]
assert list(A.predecessors_iter(2)) == ["1"]
assert A.successors(1) == ["2"]
assert list(A.successors_iter(1)) == ["2"]
assert A.successors(2) == ["3"]
assert list(A.successors_iter(2)) == ["3"]
assert sorted(A.out_degree()) == [0, 1, 1]
assert sorted(A.out_degree(with_labels=True).values()) == [0, 1, 1]
assert sorted(A.out_degree_iter()) == [("1", 1), ("2", 1), ("3", 0)]
assert sorted(A.in_degree()) == [0, 1, 1]
assert sorted(A.in_degree(with_labels=True).values()) == [0, 1, 1]
assert sorted(A.in_degree_iter()) == [("1", 0), ("2", 1), ("3", 1)]
assert A.in_degree(1) == 0
assert A.out_degree(1) == 1
assert A.in_degree(2) == 1
assert A.out_degree(2) == 1
ans = """strict digraph { 1 -> 2; 2 -> 3; }"""
assert stringify(A) == ans
ans = """strict digraph { 2 -> 1; 3 -> 2; }"""
assert stringify(A.reverse()) == ans
def test_name(self):
A = pgv.AGraph(name="test")
assert A.name == "test"
B = A.reverse()
assert B.name == "test"
@pytest.mark.parametrize(
"d",
(
{0: {1: {}}, 1: {0: {}, 2: {}}, 2: {1: {}}}, # Dict-of-dicts
{0: [1], 1: [0, 2], 2: [1]}, # Dict-of-lists
),
)
def test_agraph_constructor_dict_input(d):
"""Test AGraph constructor with thing = dod or dol."""
# d is a dod or dol representation of a path graph with 3 nodes
A = pgv.AGraph(d)
assert sorted(A.nodes()) == ["0", "1", "2"]
assert sorted(A.edges()) == [("0", "1"), ("1", "2")]
def test_agraph_constructor_handle_input():
"""Test AGraph constructor with thing= a Swig pointer - graph handle."""
base = pgv.AGraph({0: [1], 1: [0, 2], 2: [1]})
child = pgv.AGraph(base.handle)
assert base == child
# AGraphs created from handle reference original graph
base.remove_node(2)
assert sorted(child.nodes()) == ["0", "1"]
def test_agraph_constructor_bad_input():
"""AGraph constructor does not support edge lists."""
with pytest.raises(TypeError, match="Unrecognized input"):
pgv.AGraph([(0, 1), (1, 2)])
def test_agraph_constructor_string_non_standard_encoding():
"""AGraph constructor with a string specifying non-utf8-encoding."""
# A path graph string in .dot format with charset specified
dotstring = 'strict graph "" {\n\tcharset="latin1";\n\t0 -- 1;\n\t1 -- 2;\n}\n'
A = pgv.AGraph(string=dotstring)
assert A.encoding == "latin1"
assert sorted(A.edges()) == [("0", "1"), ("1", "2")]
def test_agraph_equality_node_attrs():
"""Graphs are not equal if node attributes differ."""
nodes = [0, 1]
# Create graphs with the same nodes
A, B = pgv.AGraph(), pgv.AGraph()
A.add_nodes_from(nodes)
B.add_nodes_from(nodes)
# Set default attributes for all nodes in each graph
A.node_attr["color"] = "red"
B.node_attr["color"] = "red"
assert A.get_node(1).attr["color"] == "red"
assert A == B
# Change attribute of a single node in B
B.get_node(1).attr["color"] = "blue"
# Graphs are no longer considered equal
assert A != B
# See #284 A and C should be different
C = pgv.AGraph()
A.add_nodes_from(nodes)
assert A != C
def test_agraph_equality_edge_attrs():
"""Graphs are not equal if edge attributes differ."""
A, B = pgv.AGraph(), pgv.AGraph()
A.add_edge(0, 1, weight=1.0)
B.add_edge(0, 1, weight=1.0)
assert A == B
# Change edge attribute
B.get_edge(0, 1).attr["weight"] = 2.0
assert A != B
# See #284 A and C should be different
C = pgv.AGraph()
A.add_edge(0, 1)
assert A != C
def test_agraph_has_edge_single_input_parsing():
"""If len(args) is 1, args[0] is assumed to be a tuple."""
A = pgv.AGraph({0: [1], 1: [0, 2], 2: [1]})
assert A.has_edge((0, 1))
assert not A.has_edge((0, 3))
def test_repr_on_incomplete_initialization():
"""Smoke test to ensure no segfaults from accessing uninitialized attributes
in __repr__ when object initialization fails. See gh-519."""
with pytest.raises(TypeError, match="Unrecognized input"):
A = pgv.AGraph(object())
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