File: parallel-tempering-2dfes.sampleoutput

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python-pymbar 4.0.3-2
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Reading potential energies...
10000 lines read, processing 10000 snapshots
Reading phi, psi trajectories...
k = 0, 10000 phi lines read, 10000 psi lines read
k = 1, 10000 phi lines read, 10000 psi lines read
k = 2, 10000 phi lines read, 10000 psi lines read
k = 3, 10000 phi lines read, 10000 psi lines read
k = 4, 10000 phi lines read, 10000 psi lines read
k = 5, 10000 phi lines read, 10000 psi lines read
k = 6, 10000 phi lines read, 10000 psi lines read
k = 7, 10000 phi lines read, 10000 psi lines read
k = 8, 10000 phi lines read, 10000 psi lines read
k = 9, 10000 phi lines read, 10000 psi lines read
k = 10, 10000 phi lines read, 10000 psi lines read
k = 11, 10000 phi lines read, 10000 psi lines read
k = 12, 10000 phi lines read, 10000 psi lines read
k = 13, 10000 phi lines read, 10000 psi lines read
k = 14, 10000 phi lines read, 10000 psi lines read
k = 15, 10000 phi lines read, 10000 psi lines read
k = 16, 10000 phi lines read, 10000 psi lines read
k = 17, 10000 phi lines read, 10000 psi lines read
k = 18, 10000 phi lines read, 10000 psi lines read
k = 19, 10000 phi lines read, 10000 psi lines read
k = 20, 10000 phi lines read, 10000 psi lines read
k = 21, 10000 phi lines read, 10000 psi lines read
k = 22, 10000 phi lines read, 10000 psi lines read
k = 23, 10000 phi lines read, 10000 psi lines read
k = 24, 10000 phi lines read, 10000 psi lines read
k = 25, 10000 phi lines read, 10000 psi lines read
k = 26, 10000 phi lines read, 10000 psi lines read
k = 27, 10000 phi lines read, 10000 psi lines read
k = 28, 10000 phi lines read, 10000 psi lines read
k = 29, 10000 phi lines read, 10000 psi lines read
k = 30, 10000 phi lines read, 10000 psi lines read
k = 31, 10000 phi lines read, 10000 psi lines read
k = 32, 10000 phi lines read, 10000 psi lines read
k = 33, 10000 phi lines read, 10000 psi lines read
k = 34, 10000 phi lines read, 10000 psi lines read
k = 35, 10000 phi lines read, 10000 psi lines read
k = 36, 10000 phi lines read, 10000 psi lines read
k = 37, 10000 phi lines read, 10000 psi lines read
k = 38, 10000 phi lines read, 10000 psi lines read
k = 39, 10000 phi lines read, 10000 psi lines read
Reading replica indices...
Replica indices for 500 iterations processed.
Permuting data by replica...
Computing statistical inefficiencies...
g_cos(phi) = 5.6
g_sin(phi) = 11.2
g_cos(psi) = 149.7
g_sin(psi) = 49.3
Subsampling data...
Using g = 149.7 to obtain 67 uncorrelated samples per temperature
67 uncorrelated samples per temperature
Computing reduced potential energies...
Binning torsions...
67 bins were populated:
bin     0 (-162.0, -162.0)           73 conformations
bin     1 (-162.0, -126.0)           14 conformations
bin     2 (-162.0,  -90.0)           14 conformations
bin     3 (-162.0,  -54.0)           27 conformations
bin     4 (-162.0,  -18.0)            3 conformations
bin     5 (-162.0,   18.0)            8 conformations
bin     6 (-162.0,   54.0)           18 conformations
bin     7 (-162.0,   90.0)           42 conformations
bin     8 (-162.0,  126.0)          141 conformations
bin     9 (-162.0,  162.0)          262 conformations
bin    10 (-126.0, -162.0)           99 conformations
bin    11 (-126.0, -126.0)           20 conformations
bin    12 (-126.0,  -90.0)           32 conformations
bin    13 (-126.0,  -54.0)           51 conformations
bin    14 (-126.0,  -18.0)           20 conformations
bin    15 (-126.0,   18.0)           18 conformations
bin    16 (-126.0,   54.0)           15 conformations
bin    17 (-126.0,   90.0)           46 conformations
bin    18 (-126.0,  126.0)          187 conformations
bin    19 (-126.0,  162.0)          306 conformations
bin    20 ( -90.0, -162.0)           51 conformations
bin    21 ( -90.0, -126.0)            8 conformations
bin    22 ( -90.0,  -90.0)           22 conformations
bin    23 ( -90.0,  -54.0)           43 conformations
bin    24 ( -90.0,  -18.0)           24 conformations
bin    25 ( -90.0,   18.0)            8 conformations
bin    26 ( -90.0,   54.0)           18 conformations
bin    27 ( -90.0,   90.0)           62 conformations
bin    28 ( -90.0,  126.0)          164 conformations
bin    29 ( -90.0,  162.0)          195 conformations
bin    30 ( -54.0, -162.0)           14 conformations
bin    31 ( -54.0, -126.0)            3 conformations
bin    32 ( -54.0,  -90.0)           16 conformations
bin    33 ( -54.0,  -54.0)           78 conformations
bin    34 ( -54.0,  -18.0)           24 conformations
bin    35 ( -54.0,   18.0)            1 conformations
bin    36 ( -54.0,   54.0)            8 conformations
bin    37 ( -54.0,   90.0)           40 conformations
bin    38 ( -54.0,  126.0)          250 conformations
bin    39 ( -54.0,  162.0)          174 conformations
bin    40 ( -18.0,  -90.0)            4 conformations
bin    41 ( -18.0,  -54.0)            5 conformations
bin    42 ( -18.0,  -18.0)            1 conformations
bin    43 ( -18.0,   90.0)            7 conformations
bin    44 ( -18.0,  126.0)           12 conformations
bin    45 ( -18.0,  162.0)            1 conformations
bin    46 (  18.0, -126.0)            1 conformations
bin    47 (  18.0,   90.0)            3 conformations
bin    48 (  54.0, -162.0)            3 conformations
bin    49 (  54.0, -126.0)            3 conformations
bin    50 (  54.0,  -90.0)            5 conformations
bin    51 (  54.0,  -54.0)            3 conformations
bin    52 (  54.0,   18.0)            2 conformations
bin    53 (  54.0,   54.0)            4 conformations
bin    54 (  54.0,   90.0)            1 conformations
bin    55 (  54.0,  126.0)            1 conformations
bin    56 (  54.0,  162.0)            5 conformations
bin    57 (  90.0, -126.0)            1 conformations
bin    58 (  90.0,  -54.0)            3 conformations
bin    59 ( 126.0,  -54.0)            1 conformations
bin    60 ( 126.0,  126.0)            1 conformations
bin    61 ( 162.0, -162.0)            1 conformations
bin    62 ( 162.0, -126.0)            1 conformations
bin    63 ( 162.0,  -54.0)            1 conformations
bin    64 ( 162.0,   90.0)            2 conformations
bin    65 ( 162.0,  126.0)            6 conformations
bin    66 ( 162.0,  162.0)            3 conformations
Computing potential of mean force...
2D PMF

     bin    phi    psi        N          f         df
       0 -162.0 -162.0       73      1.977      0.459
       1 -162.0 -126.0       14      4.928      1.018
       2 -162.0  -90.0       14      2.976      0.775
       3 -162.0  -54.0       27      3.620      0.703
       4 -162.0  -18.0        3      5.846      1.000
       5 -162.0   18.0        8      4.586      1.018
       6 -162.0   54.0       18     33.383      1.057
       7 -162.0   90.0       42      2.626      0.656
       8 -162.0  126.0      141      1.261      0.361
       9 -162.0  162.0      262      0.468      0.268
      10 -126.0 -162.0       99      1.511      0.369
      11 -126.0 -126.0       20      2.865      0.652
      12 -126.0  -90.0       32      3.501      1.004
      13 -126.0  -54.0       51      2.529      0.672
      14 -126.0  -18.0       20      3.564      0.877
      15 -126.0   18.0       18      3.759      0.893
      16 -126.0   54.0       15      3.201      0.755
      17 -126.0   90.0       46      2.406      0.565
      18 -126.0  126.0      187      0.638      0.280
      19 -126.0  162.0      306      0.000      0.000
      20  -90.0 -162.0       51      3.452      0.856
      21  -90.0 -126.0        8      8.074      1.026
      22  -90.0  -90.0       22      3.291      0.737
      23  -90.0  -54.0       43      2.214      0.485
      24  -90.0  -18.0       24      5.407      1.022
      25  -90.0   18.0        8     17.434      1.042
      26  -90.0   54.0       18      9.484      1.029
      27  -90.0   90.0       62      1.791      0.454
      28  -90.0  126.0      164      0.762      0.285
      29  -90.0  162.0      195      0.281      0.251
      30  -54.0 -162.0       14      4.267      0.786
      31  -54.0 -126.0        3    156.543      1.113
      32  -54.0  -90.0       16      3.288      0.775
      33  -54.0  -54.0       78      2.491      0.517
      34  -54.0  -18.0       24      4.013      0.948
      35  -54.0   18.0        1    410.768      1.164
      36  -54.0   54.0        8     49.084      1.069
      37  -54.0   90.0       40      2.770      0.691
      38  -54.0  126.0      250      0.305      0.246
      39  -54.0  162.0      174      1.131      0.312
      40  -18.0  -90.0        4     26.016      1.051
      41  -18.0  -54.0        5     76.061      1.084
      42  -18.0  -18.0        1    290.049      1.144
      43  -18.0   90.0        7      3.329      1.014
      44  -18.0  126.0       12      7.701      1.022
      45  -18.0  162.0        1    221.420      1.130
      46   18.0 -126.0        1    265.057      1.140
      47   18.0   90.0        3     70.372      1.081
      48   54.0 -162.0        3    228.554      1.132
      49   54.0 -126.0        3      3.502      0.963
      50   54.0  -90.0        5    106.300      1.096
      51   54.0  -54.0        3      6.231      1.025
      52   54.0   18.0        2    218.088      1.129
      53   54.0   54.0        4     30.542      1.055
      54   54.0   90.0        1    179.266      1.120
      55   54.0  126.0        1    343.080      1.154
      56   54.0  162.0        5     91.627      1.090
      57   90.0 -126.0        1    396.937      1.162
      58   90.0  -54.0        3    222.664      1.130
      59  126.0  -54.0        1    448.397      1.169
      60  126.0  126.0        1    367.001      1.158
      61  162.0 -162.0        1    226.688      1.131
      62  162.0 -126.0        1    309.771      1.148
      63  162.0  -54.0        1    431.276      1.167
      64  162.0   90.0        2    230.870      1.132
      65  162.0  126.0        6      7.949      0.929
      66  162.0  162.0        3      8.772      1.031