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import unittest
import os
from pymummer import snp
data_dir = "tests/data"
class TestSnp(unittest.TestCase):
def test_str_no_c_option(self):
"""Test __str__ with format with no -C option"""
l_in = [
"187",
"A",
"C",
"269",
"187",
"187",
"654",
"853",
"1",
"1",
"ref_name",
"qry_name",
]
s = snp.Snp("\t".join(l_in))
expected = "\t".join(
["187", "A", "C", "269", "654", "853", "1", "ref_name", "qry_name"]
)
self.assertEqual(str(s), expected)
def test_str_with_c_option(self):
"""Test __str__ with format with -C option"""
l_in = [
"187",
"A",
"C",
"269",
"187",
"187",
"0",
"0",
"654",
"853",
"1",
"-1",
"ref_name",
"qry_name",
]
s = snp.Snp("\t".join(l_in))
expected = "\t".join(
["187", "A", "C", "269", "654", "853", "-1", "ref_name", "qry_name"]
)
self.assertEqual(str(s), expected)
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