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#!/usr/bin/env python
# -*- coding: utf-8 -*-
"""
Simple parser ... of cf playground :)
"""
from __future__ import print_function
import sys
import pymzml
import get_example_file
def main(verbose = False):
file_n = 0
successful = dict()
for example_file in get_example_file.SHA256_DICT.keys():
file_n += 1
n = 1
if verbose:
print("{0}\t{1}\t{2}".format(file_n, n, example_file),file = sys.stderr)
try:
for spec in pymzml.run.Reader(get_example_file.open_example(example_file)):
n += 1
spec.peaks
spec.centroidedPeaks
spec.removeNoise('median')
spec.hasPeak(100)
spec.deRef()
spec.extremeValues('mz')
spec.extremeValues('i')
successful[example_file] = True
except:
if verbose:
raise
successful[example_file] = False
return False
if verbose:
for file in successful:
print('{0}\t{1}'.format(file, successful[file]))
return True
if __name__ == '__main__':
main(verbose = True)
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